Evidence map›Paper›PMID 29138994›Full record

ArticleVirus genes2018

Molecular characterization and recombination analysis of porcine reproductive and respiratory syndrome virus emerged in southwestern China during 2012-2016.

Long Zhou, Runmin Kang, Gaosheng Ji, Yiming Tian, Mengyun Ge, Bo Xie, Xin Yang, Hongning Wang

Abstract read
PubMed Publisher
In one paragraph

Article in Virus genes, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
4.3field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 40 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Long ZhouAnimal Disease Prevention and Food Safety Key Laboratory of Sichuan Province, Key Laboratory of Bio-resources and Eco-environment, Ministry of Education, School of Life Science, Sichuan University, 29# Wangjiang Road, Chengdu, People's Republic of China.
Runmin KangAnimal Disease Prevention and Food Safety Key Laboratory of Sichuan Province, Key Laboratory of Bio-resources and Eco-environment, Ministry of Education, School of Life Science, Sichuan University, 29# Wangjiang Road, Chengdu, People's Republic of China.
Gaosheng JiAnimal Disease Prevention and Food Safety Key Laboratory of Sichuan Province, Key Laboratory of Bio-resources and Eco-environment, Ministry of Education, School of Life Science, Sichuan University, 29# Wangjiang Road, Chengdu, People's Republic of China.
Yiming TianAnimal Disease Prevention and Food Safety Key Laboratory of Sichuan Province, Key Laboratory of Bio-resources and Eco-environment, Ministry of Education, School of Life Science, Sichuan University, 29# Wangjiang Road, Chengdu, People's Republic of China.
Mengyun GeAnimal Disease Prevention and Food Safety Key Laboratory of Sichuan Province, Key Laboratory of Bio-resources and Eco-environment, Ministry of Education, School of Life Science, Sichuan University, 29# Wangjiang Road, Chengdu, People's Republic of China.
Bo XieAnimal Healthy Disease Service, Chengdu Chia Tai Agro-Industry & Food Co., Ltd, Gongping Town, Wenjiang District, Chengdu, People's Republic of China.
Xin YangAnimal Disease Prevention and Food Safety Key Laboratory of Sichuan Province, Key Laboratory of Bio-resources and Eco-environment, Ministry of Education, School of Life Science, Sichuan University, 29# Wangjiang Road, Chengdu, People's Republic of China.
Hongning WangAnimal Disease Prevention and Food Safety Key Laboratory of Sichuan Province, Key Laboratory of Bio-resources and Eco-environment, Ministry of Education, School of Life Science, Sichuan University, 29# Wangjiang Road, Chengdu, People's Republic of China. whongning@163.com.
Sichuan University · CN

Funding

Fund of Sichuan Provincial Basic Scientific Research 2016YSKY0144Program of Main Livestock Standardized Breeding Technology Research and Demonstration 2016NYZ0052Program of Science and Technology Support Program of Sichuan Province, China 2013NZ0056Program of Science and Technology Support Program of Sichuan Province, China 2016NZ0006
6 · The paper itself

Abstract

Porcine reproductive and respiratory syndrome virus (PRRSV) is an important swine pathogen causing tremendous economic losses to the swine industry. To investigate the prevalence of PRRSV of genotype 2 (North American type, NA-type) in southwestern China, the Nsp2 hypervariable region (Nsp2 HV) and ORF5 of 61 PRRS viruses collected during 2012-2016 were sequenced and analyzed. All the virus detected clustered into the JXA1-like (52/61), VR-2332-like (7/61), and NADC30-like (2/61) sub-genotypes. Five deletions in Nsp2 HV were detected in addition to the typical 30aa discontinuous deletion in HP-PRRSV, and two of these five were not reported previously. Strikingly, two PRRS virus (SCnj16 and SCcd16) isolated in 2016 contained the classic HP-PRRSV molecular marker in the Nsp2-coding region, but belonged to the NADC30-like sub-genotype on the ORF5 gene. Further recombination and phylogenetic analysis on the two complete genomic sequences revealed that they may have originated from recombination events between the NADC30 and Chinese HP-PRRSV strains. The present study suggests that the endemic PRRSVs in the region have continuously evolved and new vaccine strategies are necessary for more efficient control of the virus.

Indexed as

Genetic VariationGenotypeRecombination, GeneticAnimalsChinaCluster AnalysisEvolution, MolecularPhylogenyPorcine Reproductive and Respiratory SyndromePorcine respiratory and reproductive syndrome virusSequence Analysis, DNASequence DeletionSequence HomologySwineViral Envelope ProteinsViral Nonstructural Proteinsglycoprotein 5, PRRSVViral Envelope ProteinsViral Nonstructural ProteinsGP5NADC30-like sub-genotypeNsp2Porcine reproductive and respiratory syndrome virus (PRRSV)Recombination

Identifiers

PMID29138994
OpenAlexW2769630226

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.