Evidence map›Paper›PMID 29138484›Full record

ArticleNature communications2017

Non-canonical activation of OmpR drives acid and osmotic stress responses in single bacterial cells.

Smarajit Chakraborty, Ricksen S Winardhi, Leslie K Morgan, Jie Yan, Linda J Kenney

Abstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 76 papers.

0numbers the graph read from it
0cells of the map it votes in
76citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

76 citing papers in PubMed.

  1. Review
  2. MntR Mediates LiaSR-RegulatedMicroorganisms · 2026
    Article
  3. Article
  4. Review
  5. Article
  6. Osmotic Stress Adaptation of Poultry-AssociatedFoods (Basel, Switzerland) · 2026
    Article
  7. Article
  8. Hijacking competitor-derived signals: RcsB/C drivesApplied and environmental microbiology · 2026
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Direct sensing of host ferric iron by an archetype histidine kinase mediates virulence of an enteric pathogen.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  16. Article
  17. Article
  18. Review
  19. Review
  20. Response ofMicroorganisms · 2024
    Review

16 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Smarajit ChakrabortyMechanobiology Institute, National University of Singapore, T-Lab, 5A Engineering Drive 1, Singapore, 117411, Singapore.
Ricksen S WinardhiMechanobiology Institute, National University of Singapore, T-Lab, 5A Engineering Drive 1, Singapore, 117411, Singapore.
Leslie K MorganJesse Brown Veterans Affairs Medical Center, Chicago, IL, 60612, USA.
Jie YanMechanobiology Institute, National University of Singapore, T-Lab, 5A Engineering Drive 1, Singapore, 117411, Singapore.ORCID http://orcid.org/0000-0002-8555-7291
Linda J KenneyMechanobiology Institute, National University of Singapore, T-Lab, 5A Engineering Drive 1, Singapore, 117411, Singapore. kenneyl@uic.edu.ORCID http://orcid.org/0000-0002-8658-0717

Funding

Dual Roles for the Salmonella SPI-2 Regulator SsrBR21AI123640 · NIAID · UNIVERSITY OF ILLINOIS AT CHICAGO · PI KENNEY, LINDA J. · 2016 to 2017
$422k
BLRD VA I01 BX000372NIAID NIH HHS R21 AI123640
6 · The paper itself

Abstract

Unlike eukaryotes, bacteria undergo large changes in osmolality and cytoplasmic pH. It has been described that during acid stress, bacteria internal pH promptly acidifies, followed by recovery. Here, using pH imaging in single living cells, we show that following acid stress, bacteria maintain an acidic cytoplasm and the osmotic stress transcription factor OmpR is required for acidification. The activation of this response is non-canonical, involving a regulatory mechanism requiring the OmpR cognate kinase EnvZ, but not OmpR phosphorylation. Single cell analysis further identifies an intracellular pH threshold ~6.5. Acid stress reduces the internal pH below this threshold, increasing OmpR dimerization and DNA binding. During osmotic stress, the internal pH is above the threshold, triggering distinct OmpR-related pathways. Preventing intracellular acidification of Salmonella renders it avirulent, suggesting that acid stress pathways represent a potential therapeutic target. These results further emphasize the advantages of single cell analysis over studies of population averages.

Indexed as

AcidsBacterial ProteinsCytoplasmEscherichia coliGene Expression ProfilingGene Expression Regulation, BacterialHydrogen-Ion ConcentrationOsmoregulationOsmotic PressureSalmonella typhimuriumSingle-Cell AnalysisTrans-ActivatorsAcidsBacterial Proteinsosmolarity response regulator proteinsTrans-Activators

Identifiers

PMID29138484
PMCPMC5686162

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.