Evidence map›Paper›PMID 29138433›Full record

ArticleScientific reports2017

Transcriptomic analysis of the regulation of stalk development in flowering Chinese cabbage (Brassica campestris) by RNA sequencing.

Xinmin Huang, Yuling Lei, Hongling Guan, Yanwei Hao, Houcheng Liu, Guangwen Sun, Riyuan Chen, Shiwei Song

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 31 citations in OpenAlex.

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  15. Identification ofInternational journal of molecular sciences · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Xinmin HuangGuangdong Provincial Engineering Technology Research Center for Protected Horticulture, College of Horticulture, South China Agricultural University, Guangzhou, 510642, Guangdong, China.
Yuling LeiGuangdong Provincial Engineering Technology Research Center for Protected Horticulture, College of Horticulture, South China Agricultural University, Guangzhou, 510642, Guangdong, China.
Hongling GuanGuangdong Provincial Engineering Technology Research Center for Protected Horticulture, College of Horticulture, South China Agricultural University, Guangzhou, 510642, Guangdong, China.
Yanwei HaoGuangdong Provincial Engineering Technology Research Center for Protected Horticulture, College of Horticulture, South China Agricultural University, Guangzhou, 510642, Guangdong, China.
Houcheng LiuGuangdong Provincial Engineering Technology Research Center for Protected Horticulture, College of Horticulture, South China Agricultural University, Guangzhou, 510642, Guangdong, China.
Guangwen SunGuangdong Provincial Engineering Technology Research Center for Protected Horticulture, College of Horticulture, South China Agricultural University, Guangzhou, 510642, Guangdong, China.
Riyuan ChenGuangdong Provincial Engineering Technology Research Center for Protected Horticulture, College of Horticulture, South China Agricultural University, Guangzhou, 510642, Guangdong, China. rychen@scau.edu.cn.
Shiwei SongGuangdong Provincial Engineering Technology Research Center for Protected Horticulture, College of Horticulture, South China Agricultural University, Guangzhou, 510642, Guangdong, China. swsong@scau.edu.cn.
South China Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Flowering Chinese cabbage is a stalk vegetable whose quality and yield are directly related to stalk development. However, no comprehensive investigations on stalk development have been performed. To address this issue, the present study used RNA sequencing to investigate transcriptional regulation at three key stages (seedling, bolting, and flowering) of stalk development in flowering Chinese cabbage. Anatomical analysis revealed that cell division was the main mode of stalk thickening and elongation at all key stages. Among the 35,327 genes expressed in shoot apices, 34,448 were annotated and 879 were identified as novel transcripts. We identified 11,514 differentially expressed genes (DEGs) among the three stages of stalk development. Functional analysis revealed that these DEGs were significantly enriched in 'ribosome' and 'plant hormone signal transduction' pathways and were involved in hormone signal transduction, cell cycle progression, and the regulation of flowering time. The roles of these genes in stalk development were explored, and a putative gene-regulation network for the stalk flowering time was established. These findings provide insight into the molecular mechanisms of stalk development in flowering Chinese cabbage that provides a new theoretical basis for stalk vegetable breeding.

Indexed as

Gene Expression Regulation, PlantGenes, PlantTranscriptomeBrassicaCell DivisionChinaFlowersGene Expression Regulation, DevelopmentalGene OntologyGene Regulatory NetworksHigh-Throughput Nucleotide SequencingMolecular Sequence AnnotationPlant CellsPlant Growth RegulatorsPlant ShootsRNA, MessengerPlant Growth RegulatorsRNA, Messenger

Identifiers

PMID29138433
PMCPMC5686075
OpenAlexW2767652017

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.