Evidence map›Paper›PMID 29138277›Full record

ArticleGenes & development2017

Coupling shRNA screens with single-cell RNA-seq identifies a dual role for mTOR in reprogramming-induced senescence.

Marieke Aarts, Athena Georgilis, Meryam Beniazza, Patrizia Beolchi, Ana Banito, Thomas Carroll, Marizela Kulisic, Daniel F Kaemena, Gopuraja Dharmalingam, Nadine Martin and 5 more

Abstract read
In one paragraph

Article in Genes & development, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed.

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  18. Sample-multiplexing approaches for single-cell sequencing.Cellular and molecular life sciences : CMLS · 2022
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Marieke AartsMedical Research Council (MRC) London Institute of Medical Sciences (LMS), London W12 0NN, United Kingdom.
Athena GeorgilisMedical Research Council (MRC) London Institute of Medical Sciences (LMS), London W12 0NN, United Kingdom.
Meryam BeniazzaMRC Centre for Regenerative Medicine, University of Edinburgh, Edinburgh EH16 4UU, United Kingdom.
Patrizia BeolchiMedical Research Council (MRC) London Institute of Medical Sciences (LMS), London W12 0NN, United Kingdom.
Ana BanitoMedical Research Council (MRC) London Institute of Medical Sciences (LMS), London W12 0NN, United Kingdom.
Thomas CarrollMedical Research Council (MRC) London Institute of Medical Sciences (LMS), London W12 0NN, United Kingdom.
Marizela KulisicWaferGen Biosystems, L-1526 Luxembourg, Luxembourg.
Daniel F KaemenaMRC Centre for Regenerative Medicine, University of Edinburgh, Edinburgh EH16 4UU, United Kingdom.
Gopuraja DharmalingamMedical Research Council (MRC) London Institute of Medical Sciences (LMS), London W12 0NN, United Kingdom.
Nadine MartinMedical Research Council (MRC) London Institute of Medical Sciences (LMS), London W12 0NN, United Kingdom.
Wolf ReikEpigenetics Programme, The Babraham Institute, Cambridge CB22 3AT, United Kingdom.
Johannes ZuberResearch Institute of Molecular Pathology (IMP), Vienna Biocenter (VBC), Vienna 1030, Austria.
Keisuke KajiMRC Centre for Regenerative Medicine, University of Edinburgh, Edinburgh EH16 4UU, United Kingdom.
Tamir ChandraEpigenetics Programme, The Babraham Institute, Cambridge CB22 3AT, United Kingdom.
Jesús GilMedical Research Council (MRC) London Institute of Medical Sciences (LMS), London W12 0NN, United Kingdom.

Funding

British Heart FoundationMedical Research Council G0901467Medical Research Council MC_U120085810Medical Research Council MR/K017047/1Medical Research Council MR/N008715/1
6 · The paper itself

Abstract

Expression of the transcription factors OCT4, SOX2, KLF4, and cMYC (OSKM) reprograms somatic cells into induced pluripotent stem cells (iPSCs). Reprogramming is a slow and inefficient process, suggesting the presence of safeguarding mechanisms that counteract cell fate conversion. One such mechanism is senescence. To identify modulators of reprogramming-induced senescence, we performed a genome-wide shRNA screen in primary human fibroblasts expressing OSKM. In the screen, we identified novel mediators of OSKM-induced senescence and validated previously implicated genes such as

Indexed as

Cellular ReprogrammingCellular SenescenceGene Expression ProfilingRNA, Small InterferingSequence Analysis, RNAAnimalsCells, CulturedCyclin-Dependent Kinase Inhibitor p21FibroblastsHumansKruppel-Like Factor 4MiceSingle-Cell AnalysisTOR Serine-Threonine KinasesTranscription FactorsCyclin-Dependent Kinase Inhibitor p21KLF4 protein, humanKlf4 protein, mouseKruppel-Like Factor 4RNA, Small InterferingTOR Serine-Threonine KinasesTranscription FactorsiPSCsSASPsenescenceshRNA screenssingle-cell RNA-seq

Identifiers

PMID29138277
PMCPMC5733499

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.