Evidence map›Paper›PMID 29136651›Full record

ArticlePLoS pathogens2017

Structural basis of glycan specificity of P[19] VP8*: Implications for rotavirus zoonosis and evolution.

Yang Liu, Shenyuan Xu, Andrew L Woodruff, Ming Xia, Ming Tan, Michael A Kennedy, Xi Jiang

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
3.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
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  7. The αTSR Domain ofInternational journal of nanomedicine · 2023
    Article
  8. Article
  9. Review
  10. Review
  11. Article
  12. Structural basis of P[II] rotavirus evolution and host ranges under selection of histo-blood group antigens.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  13. The Rotavirus Vaccine Landscape, an Update.Pathogens (Basel, Switzerland) · 2021
    Review
  14. Review
  15. Article
  16. Structural Basis of Glycan Recognition of Rotavirus.Frontiers in molecular biosciences · 2021
    Review
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Yang LiuTianjin Key Laboratory of Molecular Nuclear Medicine, Institute of Radiation Medicine, Chinese Academy of Medical Sciences and Peking Union Medical College, Tianjin, China.
Shenyuan XuDepartment of Chemistry and Biochemistry, Miami University, Oxford, OH, United States of America.ORCID http://orcid.org/0000-0002-9903-1944
Andrew L WoodruffDepartment of Chemistry and Biochemistry, Miami University, Oxford, OH, United States of America.ORCID http://orcid.org/0000-0002-5818-360X
Ming XiaDivision of Infectious Diseases, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, United States of America.
Ming TanDivision of Infectious Diseases, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, United States of America.
Michael A KennedyDepartment of Chemistry and Biochemistry, Miami University, Oxford, OH, United States of America.ORCID http://orcid.org/0000-0001-6462-665X
Xi JiangDivision of Infectious Diseases, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, United States of America.ORCID http://orcid.org/0000-0003-1932-442X
Cincinnati Children's Hospital Medical Center · USMiami University · US

Funding

Stem Cell/Organoid and Genome Editing CoreP30DK078392 · NIDDK · CINCINNATI CHILDRENS HOSP MED CTR · PI Alexander Miethke · 2007 to 2026
$24.4M
Receptors of RotavirusR56AI114831 · NIAID · CINCINNATI CHILDRENS HOSP MED CTR · PI JIANG, XI · 2016 to 2016
$528k
Prevalence of P[6] and P[11] rotaviruses in developing countriesR21AI130631 · NIAID · CINCINNATI CHILDRENS HOSP MED CTR · PI JIANG, XI · 2017 to 2018
$402k
NIAID NIH HHS R21 AI130631NIAID NIH HHS R56 AI114831NIDDK NIH HHS P30 DK078392
6 · The paper itself

Abstract

Recognition of specific cell surface glycans, mediated by the VP8* domain of the spike protein VP4, is the essential first step in rotavirus (RV) infection. Due to lack of direct structural information of virus-ligand interactions, the molecular basis of ligand-controlled host ranges of the major human RVs (P[8] and P[4]) in P[II] genogroup remains unknown. Here, through characterization of a minor P[II] RV (P[19]) that can infect both animals (pigs) and humans, we made an important advance to fill this knowledge gap by solving the crystal structures of the P[19] VP8* in complex with its ligands. Our data showed that P[19] RVs use a novel binding site that differs from the known ones of other genotypes/genogroups. This binding site is capable of interacting with two types of glycans, the mucin core and type 1 histo-blood group antigens (HBGAs) with a common GlcNAc as the central binding saccharide. The binding site is apparently shared by other P[II] RVs and possibly two genotypes (P[10] and P[12]) in P[I] as shown by their highly conserved GlcNAc-interacting residues. These data provide strong evidence of evolutionary connections among these human and animal RVs, pointing to a common ancestor in P[I] with a possible animal host origin. While the binding properties to GlcNAc-containing saccharides are maintained, changes in binding to additional residues, such as those in the polymorphic type 1 HBGAs may occur in the course of RV evolution, explaining the complex P[II] genogroup that mainly causes diseases in humans but also in some animals.

Indexed as

AnimalsBinding SitesGenetic VariationGenotypeHost SpecificityHumansPolysaccharidesRNA-Binding ProteinsRotavirusRotavirus InfectionsViral Nonstructural ProteinsZoonosesNS35 protein, rotavirusPolysaccharidesRNA-Binding ProteinsViral Nonstructural Proteins

Identifiers

PMID29136651
PMCPMC5705156
OpenAlexW2770314967

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.