Evidence map›Paper›PMID 29133885›Full record

ArticleScientific reports2017

A conserved stem of the Myxococcus xanthus sRNA Pxr controls sRNA accumulation and multicellular development.

Yuen-Tsu N Yu, Elizabeth Cooper, Gregory J Velicer

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Mutation ofFrontiers in microbiology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Yuen-Tsu N YuInstitute of Integrative Biology, ETH Zurich, Universitätstrasse 16, 8092, Zurich, Switzerland. nicco.yu@env.ethz.ch.
Elizabeth CooperDepartment of Biology, Indiana University, Bloomington, IN, 47405, USA.
Gregory J VelicerInstitute of Integrative Biology, ETH Zurich, Universitätstrasse 16, 8092, Zurich, Switzerland. gregory.velicer@env.ethz.ch.
Indiana University Bloomington · USETH Zurich · CH

Funding

Comprehensive analysis of evolutionary mutations in a highly social bacteriumR01GM079690 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI VELICER, GREGORY J · 2007 to 2011
$1.4M
NIGMS NIH HHS R01 GM079690
6 · The paper itself

Abstract

The small RNA (sRNA) Pxr negatively controls multicellular fruiting body formation in the bacterium Myxococcus xanthus, inhibiting the transition from growth to development when nutrients are abundant. Like many other prokaryotic sRNAs, Pxr is predicted to fold into three stem loops (SL1-SL3). SL1 and SL2 are highly conserved across the myxobacteria, whereas SL3 is much more variable. SL1 is necessary for the regulatory function of Pxr but the importance of SL3 in this regard is unknown. To test for cis genetic elements required for Pxr function, we deleted the entire pxr gene from a developmentally defective strain that fails to remove Pxr-mediated blockage of development and reintroduced variably truncated fragments of the pxr region to test for their ability to block development. These truncations demonstrated that SL3 is necessary for Pxr function in the defective strain. We further show that a highly conserved eight-base-pair segment of SL3 is not only necessary for Pxr to block development in the defective strain under starvation conditions, but is also required for Pxr to prevent fruiting body development by a developmentally proficient wild-type strain under high-nutrient conditions. This conserved segment of SL3 is also necessary for detectable levels of Pxr to accumulate, suggesting that this segment either stabilizes Pxr against premature degradation during vegetative growth or positively regulates its transcription.

Indexed as

Nucleic Acid ConformationEnhancer Elements, GeneticEvolution, MolecularGenes, BacterialMyxococcus xanthusRNA, BacterialTranscription, GeneticRNA, Bacterial

Identifiers

PMID29133885
PMCPMC5684412
OpenAlexW2767740601

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.