Evidence map›Paper›PMID 29133588›Full record

ArticleJournal of cell science2017

Quantitative analysis of multilayer organization of proteins and RNA in nuclear speckles at super resolution.

Jingyi Fei, Mahdieh Jadaliha, Tyler S Harmon, Isaac T S Li, Boyang Hua, Qinyu Hao, Alex S Holehouse, Matthew Reyer, Qinyu Sun, Susan M Freier and 3 more

Abstract read
In one paragraph

Article in Journal of cell science, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 192 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
192citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

192 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
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  7. Review
  8. Epigenetic regulation of transgenes.Journal of biotechnology · 2026
    Review
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132 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Jingyi FeiDepartment of Biochemistry and Molecular Biology, The University of Chicago, Chicago, IL 60637, USA jingyifei@uchicago.edu kumarp@illinois.edu.
Mahdieh JadalihaDepartment of Cell and Developmental Biology, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.
Tyler S HarmonDepartment of Biomedical Engineering and Center for Biological Systems Engineering, Washington University in St. Louis, St. Louis, MO 63130, USA.
Isaac T S LiDepartment of Chemistry, University of British Columbia Okanagan, Kelowna, British Columbia, Canada, V1V 1V7.
Boyang HuaCenter for Biophysics and Quantitative Biology, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.
Qinyu HaoDepartment of Cell and Developmental Biology, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.
Alex S HolehouseDepartment of Biomedical Engineering and Center for Biological Systems Engineering, Washington University in St. Louis, St. Louis, MO 63130, USA.
Matthew ReyerInstitute for Biophysical Dynamics, The University of Chicago, Chicago, IL 60637, USA.
Qinyu SunDepartment of Cell and Developmental Biology, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.
Susan M FreierIonis Pharmaceuticals Inc., Carlsbad, CA 92010, USA.
Rohit V PappuDepartment of Biomedical Engineering and Center for Biological Systems Engineering, Washington University in St. Louis, St. Louis, MO 63130, USA.
Kannanganattu V PrasanthDepartment of Cell and Developmental Biology, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA jingyifei@uchicago.edu kumarp@illinois.edu.ORCID http://orcid.org/0000-0003-4587-8362
Taekjip HaCenter for Biophysics and Quantitative Biology, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.ORCID http://orcid.org/0000-0002-9775-3820

Funding

Graduate Program in Biophysical Sciences at the University of Chicago - Renewal 0T32EB009412 · NIBIB · UNIVERSITY OF CHICAGO · PI ENGEL, GREGORY S, SOSNICK, TOBIN R · 2009 to 2023
$4.9M
ROLE OF CHAIN LENGTH AND SEQUENCE CONTEXTS ON POLYGLUTAMINE OLIGOMERIZATIONR01NS056114 · NINDS · WASHINGTON UNIVERSITY · PI PAPPU, ROHIT V · 2007 to 2020
$4.4M
Characterization of nuclear retained RNA-mediated gene regulatory mechanismR01GM088252 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI KANNANGANATTU, PRASANTH KUMAR VIJAYAN · 2011 to 2015
$1.4M
NIBIB NIH HHS T32 EB009412NIGMS NIH HHS R01 GM088252NINDS NIH HHS R01 NS056114
6 · The paper itself

Abstract

Nuclear speckles are self-assembled organelles composed of RNAs and proteins. They are proposed to act as structural domains that control distinct steps in gene expression, including transcription, splicing and mRNA export. Earlier studies identified differential localization of a few components within the speckles. It was speculated that the spatial organization of speckle components might contribute directly to the order of operations that coordinate distinct processes. Here, by performing multi-color structured illumination microscopy, we characterized the multilayer organization of speckles at a higher resolution. We found that SON and SC35 (also known as SRSF2) localize to the central region of the speckle, whereas

Indexed as

Cell NucleusDNA-Binding ProteinsGene Expression RegulationHeLa CellsHumansMinor Histocompatibility AntigensOrganellesProteinsRNARNA, Long NoncodingRNA, Small NucleolarSerine-Arginine Splicing FactorsDNA-Binding ProteinsMALAT1 long non-coding RNA, humanMinor Histocompatibility AntigensProteinsRNARNA, Long NoncodingRNA, Small NucleolarSerine-Arginine Splicing FactorsSON protein, humanSRSF2 protein, humanLong noncoding RNANuclear domainSplicing factorSub-nuclear compartmentalization

Identifiers

PMID29133588
PMCPMC5769577

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.