Evidence map›Paper›PMID 29133414›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2017

Correlating kinetic and structural data on ubiquinone binding and reduction by respiratory complex I.

Justin G Fedor, Andrew J Y Jones, Andrea Di Luca, Ville R I Kaila, Judy Hirst

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
4.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 101 citations in OpenAlex.

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  12. Coenzyme Q10 trapping in mitochondrial complex I underlies Leber's hereditary optic neuropathy.Proceedings of the National Academy of Sciences of the United States of America · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Justin G FedorMedical Research Council Mitochondrial Biology Unit, University of Cambridge, Cambridge, CB2 0XY, United Kingdom.
Andrew J Y JonesMedical Research Council Mitochondrial Biology Unit, University of Cambridge, Cambridge, CB2 0XY, United Kingdom.
Andrea Di LucaDepartment of Chemistry, Technical University of Munich, D-85747 Garching, Germany.
Ville R I KailaDepartment of Chemistry, Technical University of Munich, D-85747 Garching, Germany.
Judy HirstMedical Research Council Mitochondrial Biology Unit, University of Cambridge, Cambridge, CB2 0XY, United Kingdom; jh@mrc-mbu.cam.ac.uk.ORCID 0000-0001-8667-6797
University of Cambridge · GBTechnical University of Munich · DE

Funding

Medical Research Council MC_U105663141Medical Research Council MC_UU_00015/2
6 · The paper itself

Abstract

Respiratory complex I (NADH:ubiquinone oxidoreductase), one of the largest membrane-bound enzymes in mammalian cells, powers ATP synthesis by using the energy from electron transfer from NADH to ubiquinone-10 to drive protons across the energy-transducing mitochondrial inner membrane. Ubiquinone-10 is extremely hydrophobic, but in complex I the binding site for its redox-active quinone headgroup is ∼20 Å above the membrane surface. Structural data suggest it accesses the site by a narrow channel, long enough to accommodate almost all of its ∼50-Å isoprenoid chain. However, how ubiquinone/ubiquinol exchange occurs on catalytically relevant timescales, and whether binding/dissociation events are involved in coupling electron transfer to proton translocation, are unknown. Here, we use proteoliposomes containing complex I, together with a quinol oxidase, to determine the kinetics of complex I catalysis with ubiquinones of varying isoprenoid chain length, from 1 to 10 units. We interpret our results using structural data, which show the hydrophobic channel is interrupted by a highly charged region at isoprenoids 4-7. We demonstrate that ubiquinol-10 dissociation is not rate determining and deduce that ubiquinone-10 has both the highest binding affinity and the fastest binding rate. We propose that the charged region and chain directionality assist product dissociation, and that isoprenoid stepping ensures short transit times. These properties of the channel do not benefit the exhange of short-chain quinones, for which product dissociation may become rate limiting. Thus, we discuss how the long channel does not hinder catalysis under physiological conditions and the possible roles of ubiquinone/ubiquinol binding/dissociation in energy conversion.

Indexed as

Amino Acid MotifsAnimalsBinding SitesBiocatalysisCattleElectron Transport Complex IGene ExpressionHydrophobic and Hydrophilic InteractionsKineticsMitochondria, HeartModels, MolecularOxidoreductasesProtein BindingProtein Interaction Domains and MotifsProtein Structure, SecondaryProteolipidsduroquinol oxidaseElectron Transport Complex IOxidoreductasesProteolipidsproteoliposomesRecombinant ProteinsTerpenesubiquinolUbiquinoneUbiquinone Q2bioenergeticscoenzyme Q10electron transport chainmitochondriaNADH:ubiquinone oxidoreductase

Identifiers

PMID29133414
PMCPMC5715780
OpenAlexW2770778494

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.