Evidence map›Paper›PMID 29132989›Full record

ArticleVaccine2017

Differential gene expression elicited by children in response to the 2015-16 live attenuated versus inactivated influenza vaccine.

Kelly Stefano Cole, Judith M Martin, William T Horne, Chyongchiou J Lin, Mary Patricia Nowalk, John F Alcorn, Richard K Zimmerman

Abstract read
In one paragraph

Article in Vaccine, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.9field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Kelly Stefano ColeDepartment of Immunology and Center for Vaccine Research, University of Pittsburgh, Pittsburgh, PA, USA.
Judith M MartinDepartment of Pediatrics, University of Pittsburgh, Pittsburgh, PA, USA.
William T HorneDepartment of Pediatrics, University of Pittsburgh, Pittsburgh, PA, USA.
Chyongchiou J LinDepartment of Family Medicine, University of Pittsburgh, Pittsburgh, PA, USA.
Mary Patricia NowalkDepartment of Family Medicine, University of Pittsburgh, Pittsburgh, PA, USA.
John F AlcornDepartment of Pediatrics, University of Pittsburgh, Pittsburgh, PA, USA.
Richard K ZimmermanDepartment of Family Medicine, University of Pittsburgh, Pittsburgh, PA, USA. Electronic address: zimmer@pitt.edu.
University of Pittsburgh · US

Funding

University of Pittsburgh Clinical and Translational Science InstituteUL1TR001857 · NCATS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI REIS, STEVEN E · 2016 to 2025
$129.3M
Outpatient VE for seasonal flu, pandemic flu and RSV in a large, diverse networkU01IP001035 · IP · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI ZIMMERMAN, RICHARD K · 2016 to 2020
$7.8M
Core_plus Option_A_C_Influenza Surveillance and Vaccine Effectiveness in a LargeU01IP000467 · IP · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI ZIMMERMAN, RICHARD K · 2011 to 2015
$5.9M
ACL HHS U01IP001035NCATS NIH HHS UL1 TR001857NCIRD CDC HHS U01 IP000467NCIRD CDC HHS U01 IP001035
6 · The paper itself

Abstract

backgroundIn recent influenza seasons, the live attenuated influenza vaccine (LAIV) has not demonstrated the same level of vaccine effectiveness as that observed among children who received the inactivated influenza vaccine (IIV). To better understand this difference, this study compared the mRNA sequencing transcription profile (RNA seq) in children who received either IIV or LAIV.

methodsChildren 3-17years of age receiving quadrivalent influenza vaccine were enrolled. Blood samples were collected on Day 0 prior to vaccination and again on Day 7 (range 6-10days) following vaccination. Total RNA was isolated from PAXgene tubes and sequenced for a custom panel of 89 transcripts using the TruSeq Targeted RNA Expression method. Fold differences in normalized RNA seq counts from Day 0 to Day 7 were calculated, log

resultsOf 72 children, 46 received IIV and 26 received LAIV. Following IIV vaccination, 7 genes demonstrated significant differential expression at Day 7 (down-regulated). In contrast, following LAIV vaccination, 8 genes demonstrated significant differential expression at Day 7 (5 up-regulated and 3 down-regulated). Only two genes demonstrated similar patterns of regulation in both groups.

conclusionsDifferential regulation of genes was observed between 2015-16 LAIV and IIV recipients. These results help to elucidate the immune response to influenza vaccines and may be related to the difference in vaccine effectiveness observed in recent years between LAIV and IIV.

Indexed as

AdolescentChildChild, PreschoolDown-RegulationFemaleGene ExpressionHumansInfluenza, HumanInfluenza VaccinesMaleSequence Analysis, RNASystems BiologyUp-RegulationVaccinationVaccine PotencyVaccines, AttenuatedInfluenza VaccinesVaccines, AttenuatedVaccines, InactivatedAntibodiesInfluenza vaccineRNA sequencing

Identifiers

PMID29132989
PMCPMC5711596
OpenAlexW2767887796

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.