Evidence map›Paper›PMID 29132312›Full record

ArticleBMC genomics2017

Genomic analysis of endemic clones of toxigenic and non-toxigenic Corynebacterium diphtheriae in Belarus during and after the major epidemic in 1990s.

Steffen Grosse-Kock, Valentina Kolodkina, Edward C Schwalbe, Jochen Blom, Andreas Burkovski, Paul A Hoskisson, Sylvain Brisse, Darren Smith, Iain C Sutcliffe, Leonid Titov and 1 more

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
  2. Article
  3. Phylogenomic analyses of multidrug resistant Corynebacterium striatum strains isolated from patients in a tertiary care hospital in the UK.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2024
    Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Genomic Analysis ofInternational journal of molecular sciences · 2023
    Article
  9. Multidrug-resistant toxigenicMicrobial genomics · 2023
    Article
  10. NewPathogens (Basel, Switzerland) · 2022
    Review
  11. Article
  12. Genomic Epidemiology and Strain Taxonomy ofJournal of clinical microbiology · 2021
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Genomic analysis of a novel nontoxigenicNew microbes and new infections · 2019
    Article
  19. Carriage of a Single Strain of NontoxigenicJournal of clinical microbiology · 2019
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 4 countries.

Steffen Grosse-KockFaculty of Health and Life Sciences, Northumbria University, Newcastle upon Tyne, UK.
Valentina KolodkinaRepublican Research and Practical Centre for Epidemiology and Microbiology, Minsk, Republic of Belarus.
Edward C SchwalbeFaculty of Health and Life Sciences, Northumbria University, Newcastle upon Tyne, UK.
Jochen BlomJustus-Liebig-Universität, Gießen, Germany.
Andreas BurkovskiFriedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, Germany.
Paul A HoskissonStrathclyde Institute of Pharmacy and Biomedical Sciences, University of Strathclyde, Glasgow, UK.
Sylvain BrisseInstitut Pasteur, Biodiversity and Epidemiology of Bacterial Pathogens, Paris, France.
Darren SmithFaculty of Health and Life Sciences, Northumbria University, Newcastle upon Tyne, UK.
Iain C SutcliffeFaculty of Health and Life Sciences, Northumbria University, Newcastle upon Tyne, UK.
Leonid TitovRepublican Research and Practical Centre for Epidemiology and Microbiology, Minsk, Republic of Belarus.
Vartul SangalFaculty of Health and Life Sciences, Northumbria University, Newcastle upon Tyne, UK. vartul.sangal@northumbria.ac.uk.ORCID http://orcid.org/0000-0002-7405-8446
Northumbria University · GBRepublican Research and Practical Center for Epidemiology and Microbiology · BYFriedrich-Alexander-Universität Erlangen-Nürnberg · DEInstitut Pasteur · FRJustus-Liebig-Universität Gießen · DEUniversity of Strathclyde · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundDiphtheria remains a major public health concern with multiple recent outbreaks around the world. Moreover, invasive non-toxigenic strains have emerged globally causing severe infections. A diphtheria epidemic in the former Soviet Union in the 1990s resulted in ~5000 deaths. In this study, we analysed the genome sequences of a collection of 93 C. diphtheriae strains collected during and after this outbreak (1996 - 2014) in a former Soviet State, Belarus to understand the evolutionary dynamics and virulence capacities of these strains.

resultsC. diphtheriae strains from Belarus belong to ten sequence types (STs). Two major clones, non-toxigenic ST5 and toxigenic ST8, encompassed 76% of the isolates that are associated with sore throat and diphtheria in patients, respectively. Core genomic diversity is limited within outbreak-associated ST8 with relatively higher mutation rates (8.9 × 10

conclusionsNon-toxigenic C. diphtheriae ST5 and toxigenic ST8 strains have been endemic in Belarus both during and after the epidemic in 1990s. A high vaccine coverage has effectively controlled diphtheria in Belarus; however, non-toxigenic strains continue to circulate in the population. Recombination is an important evolutionary force in shaping the genomic diversity in C. diphtheriae. However, the relative role of recombination and mutations in diversification varies between different clones.

Indexed as

Endemic DiseasesGenomicsAsymptomatic DiseasesCorynebacterium diphtheriaeDiphtheriaEvolution, MolecularHumansRepublic of BelarusSpecies SpecificityCorynebacterium diphtheriaeDiphtheriaEndemicEpidemicNon-toxigenicSore throatToxigenicVaccineVirulence

Identifiers

PMID29132312
PMCPMC5683216
OpenAlexW2768356178

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.