Evidence map›Paper›PMID 29130884›Full record

ArticleeLife2017

Ubiquitin turnover and endocytic trafficking in yeast are regulated by Ser57 phosphorylation of ubiquitin.

Sora Lee, Jessica M Tumolo, Aaron C Ehlinger, Kristin K Jernigan, Susan J Qualls-Histed, Pi-Chiang Hsu, W Hayes McDonald, Walter J Chazin, Jason A MacGurn

Open access · goldAbstract read
In one paragraph

Article in eLife, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 37 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
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  6. Article
  7. Review
  8. When Phosphatases Go Mad: The Molecular Basis for Toxicity of Yeast Ppz1.International journal of molecular sciences · 2022
    Review
  9. Article
  10. Article
  11. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Sora LeeDepartment of Cell and Developmental Biology, Vanderbilt University, Nashville, United States.ORCID http://orcid.org/0000-0001-9514-8152
Jessica M TumoloDepartment of Cell and Developmental Biology, Vanderbilt University, Nashville, United States.
Aaron C EhlingerDepartment of Biochemistry, Vanderbilt University, Nashville, United States.
Kristin K JerniganDepartment of Cell and Developmental Biology, Vanderbilt University, Nashville, United States.
Susan J Qualls-HistedDepartment of Cell and Developmental Biology, Vanderbilt University, Nashville, United States.
Pi-Chiang HsuWeill Institute for Cell and Molecular Biology, Cornell University, Ithaca, United States.
W Hayes McDonaldDepartment of Biochemistry, Vanderbilt University, Nashville, United States.
Walter J ChazinDepartment of Biochemistry, Vanderbilt University, Nashville, United States.
Jason A MacGurnDepartment of Cell and Developmental Biology, Vanderbilt University, Nashville, United States.ORCID http://orcid.org/0000-0001-5063-259X
Vanderbilt University · USCornell University · US

Funding

BIOCHEMICAL &CHEMICAL TRAINING FOR CANCER RESEARCHT32CA009582 · NCI · VANDERBILT UNIVERSITY · PI David K Cortez · 1987 to 2026
$8.8M
MOLECULAR BIOPHYSICS TRAINING PROGRAM AT VANDERBILTT32GM008320 · NIGMS · VANDERBILT UNIVERSITY · PI CHAZIN, WALTER J. · 1989 to 2023
$7.9M
Integrated Biological Systems Training in OncologyT32CA119925 · NCI · VANDERBILT UNIVERSITY · PI Vivian Gama, William Patrick Tansey · 2008 to 2026
$7.6M
Immunobiology of Blood and Vascular Systems Training ProgramT32HL069765 · NHLBI · VANDERBILT UNIVERSITY · PI HAWIGER, JACK J · 2002 to 2016
$6.5M
Structural Biology of Multi-Domain Proteins and Multi-Protein Machinery in DNA Replication and RepairR35GM118089 · NIGMS · VANDERBILT UNIVERSITY · PI WALTER J. CHAZIN · 2016 to 2026
$4.9M
Molecular Mechanisms for Regulation of Ubiquitin MetabolismR01GM118491 · NIGMS · VANDERBILT UNIVERSITY · PI MACGURN, JASON A · 2016 to 2020
$1.7M
Substrate Targeting Mechanisms of Nedd4 Family Ubiquitin LigasesR00GM101077 · NIGMS · VANDERBILT UNIVERSITY · PI MACGURN, JASON A · 2014 to 2016
$747k
Console upgrades for biological NMR spectrometersS10RR025677 · NCRR · VANDERBILT UNIVERSITY · PI SANDERS, CHARLES R · 2009 to 2009
$460k
NCI NIH HHS T32 CA009582NCI NIH HHS T32 CA119925NCRR NIH HHS S10 RR025677NHLBI NIH HHS T32 HL069765NIGMS NIH HHS R00 GM101077NIGMS NIH HHS R01 GM118491NIGMS NIH HHS R35 GM118089NIGMS NIH HHS T32 GM008320
6 · The paper itself

Abstract

Despite its central role in protein degradation little is known about the molecular mechanisms that sense, maintain, and regulate steady state concentration of ubiquitin in the cell. Here, we describe a novel mechanism for regulation of ubiquitin homeostasis that is mediated by phosphorylation of ubiquitin at the Ser57 position. We find that loss of Ppz phosphatase activity leads to defects in ubiquitin homeostasis that are at least partially attributable to elevated levels of Ser57 phosphorylated ubiquitin. Phosphomimetic mutation at the Ser57 position of ubiquitin conferred increased rates of endocytic trafficking and ubiquitin turnover. These phenotypes are associated with bypass of recognition by endosome-localized deubiquitylases - including Doa4 which is critical for regulation of ubiquitin recycling. Thus, ubiquitin homeostasis is significantly impacted by the rate of ubiquitin flux through the endocytic pathway and by signaling pathways that converge on ubiquitin itself to determine whether it is recycled or degraded in the vacuole.

Indexed as

EndocytosisProtein Processing, Post-TranslationalHomeostasisPhosphoprotein PhosphatasesPhosphorylationSaccharomyces cerevisiae ProteinsUbiquitinYeastsPhosphoprotein PhosphatasesPPZ1 protein, S cerevisiaePPZ2 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsUbiquitincell biologydeubiquitylase regulationmembrane traffickingphosphatase signalingS. cerevisiaeubiquitin homeostasis

Identifiers

PMID29130884
PMCPMC5706963
OpenAlexW2769715541

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.