Evidence map›Paper›PMID 29129073›Full record

ArticleJournal of proteome research2018

Stage Dependence, Cell-Origin Independence, and Prognostic Capacity of Serum Glycan Fucosylation, β1-4 Branching, β1-6 Branching, and α2-6 Sialylation in Cancer.

Shadi Ferdosi, Douglas S Rehder, Paul Maranian, Erik P Castle, Thai H Ho, Harvey I Pass, Daniel W Cramer, Karen S Anderson, Lei Fu, David E C Cole and 3 more

Abstract read
In one paragraph

Article in Journal of proteome research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 22 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Shadi FerdosiSchool of Molecular Sciences, Arizona State University , Tempe, Arizona 85287, United States.ORCID 0000-0003-2933-8809
Douglas S RehderVirginia G. Piper Center for Personalized Diagnostics, The Biodesign Institute at Arizona State University , Tempe, Arizona 85287, United States.
Paul MaranianVirginia G. Piper Center for Personalized Diagnostics, The Biodesign Institute at Arizona State University , Tempe, Arizona 85287, United States.
Erik P Castle
Thai H Ho
Harvey I PassCardiothoracic Surgery, NYU Langone Medical Center , New York, New York 10016, United States.
Daniel W Cramer
Karen S AndersonVirginia G. Piper Center for Personalized Diagnostics, The Biodesign Institute at Arizona State University , Tempe, Arizona 85287, United States.
Lei Fu
David E C Cole
Tao LeUniversity of Texas MD Anderson Cancer Center , Houston, Texas 77030, United States.
Xifeng WuUniversity of Texas MD Anderson Cancer Center , Houston, Texas 77030, United States.
Chad R BorgesSchool of Molecular Sciences, Arizona State University , Tempe, Arizona 85287, United States.ORCID 0000-0002-8122-3438
Arizona State University · USThe University of Texas MD Anderson Cancer Center · USNYU Langone Health · US

Funding

UNIVERSITY OF TEXAS--SPORE IN LUNG CANCERP50CA070907 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI HEYMACH, JOHN V., MINNA, JOHN D. · 1996 to 2024
$57.4M
Epigenetic miRNA, SNP Signatures, and their Functions in Lung Cancer OutcomesR01CA176568 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI GU, JIAN, ROTH, JACK · 2014 to 2018
$2.5M
Validation and Advanced Development of Glycan Node Analysis in Lung Cancer ResearchR33CA191110 · NCI · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI BORGES, CHAD R · 2015 to 2016
$558k
NCI NIH HHS P50 CA070907NCI NIH HHS R01 CA176568NCI NIH HHS R33 CA191110
6 · The paper itself

Abstract

Glycans represent a promising but only marginally accessed source of cancer markers. We previously reported the development of a molecularly bottom-up approach to plasma and serum (P/S) glycomics based on glycan linkage analysis that captures features such as α2-6 sialylation, β1-6 branching, and core fucosylation as single analytical signals. Based on the behavior of P/S glycans established to date, we hypothesized that the alteration of P/S glycans observed in cancer would be independent of the tissue in which the tumor originated yet exhibit stage dependence that varied little between cancers classified on the basis of tumor origin. Herein, the diagnostic utility of this bottom-up approach as applied to lung cancer patients (n = 127 stage I; n = 20 stage II; n = 81 stage III; and n = 90 stage IV) as well as prostate (n = 40 stage II), serous ovarian (n = 59 stage III), and pancreatic cancer patients (n = 15 rapid autopsy) compared to certifiably healthy individuals (n = 30), nominally healthy individuals (n = 166), and risk-matched controls (n = 300) is reported. Diagnostic performance in lung cancer was stage-dependent, with markers for terminal (total) fucosylation, α2-6 sialylation, β1-4 branching, β1-6 branching, and outer-arm fucosylation most able to differentiate cases from controls. These markers behaved in a similar stage-dependent manner in other types of cancer as well. Notable differences between certifiably healthy individuals and case-matched controls were observed. These markers were not significantly elevated in liver fibrosis. Using a Cox proportional hazards regression model, the marker for α2-6 sialylation was found to predict both progression and survival in lung cancer patients after adjusting for age, gender, smoking status, and stage. The potential mechanistic role of aberrant P/S glycans in cancer progression is discussed.

Indexed as

Carbohydrate SequenceCase-Control StudiesFucoseGlycomicsGlycosylationHumansN-Acetylneuraminic AcidNeoplasmsPolysaccharidesPrognosisFucoseN-Acetylneuraminic AcidPolysaccharidesbranchingcancerfucosylationglycansplasmaprogressionserumsialylationsmokingsurvival

Identifiers

PMID29129073
PMCPMC5978412
OpenAlexW2767650726

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.