Evidence map›Paper›PMID 29129016›Full record

ArticleJournal of chemical ecology2017

Exploring genes involved in benzoic acid biosynthesis in the Populus davidiana transcriptome and their transcriptional activity upon methyl jasmonate treatment.

Seong-Bum Park, Jong Youn Kim, Jung Yeon Han, Chang-Ho Ahn, Eung-Jun Park, Yong Eui Choi

Abstract read
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In one paragraph

Article in Journal of chemical ecology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Enhanced bioproduction of phenolic compounds fromFrontiers in molecular biosciences · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Seong-Bum ParkDepartment of Forest Resources, College of Forest and Environmental Sciences, Kangwon National University, Chuncheon, 200-701, South Korea.
Jong Youn KimDepartment of Forest Resources, College of Forest and Environmental Sciences, Kangwon National University, Chuncheon, 200-701, South Korea.
Jung Yeon HanDepartment of Forest Resources, College of Forest and Environmental Sciences, Kangwon National University, Chuncheon, 200-701, South Korea.
Chang-Ho AhnDepartment of Forest Resources, College of Forest and Environmental Sciences, Kangwon National University, Chuncheon, 200-701, South Korea.
Eung-Jun ParkDivision of Forest Biotechnology, Korea Forest Research Institute, Suwon, 441-847, South Korea.
Yong Eui ChoiDepartment of Forest Resources, College of Forest and Environmental Sciences, Kangwon National University, Chuncheon, 200-701, South Korea. yechoi@kangwon.ac.kr.
Kangwon National University · KRKorea Forest Service · KR

Funding

Kangwon National University S111414L070110
6 · The paper itself

Abstract

Benzoic acids (BAs) are important structural elements in a wide variety of essential compounds and natural products, and play crucial roles in plant fitness. BA is a precursor of diverse benzenoid compounds, including the hormone salicylic acid (SA) and the aglycone moiety of salicin, which is particularly important in the Salicaceae family. The biosynthetic pathways leading to BA formation in plants are largely unknown. Recently, the CoA-dependent β-oxidative BA biosynthesis pathway, which occurs in peroxisomes, has been characterized in petunia. The core of this pathway is cinnamic acid → cinnamoyl-CoA → 3-hydroxy-3-phenylpropanoyl-CoA → 3-oxo-3-phenylpropanoyl-CoA → benzoyl-CoA. Here, we used 454 pyrosequencing to analyze the transcriptome of Populus davidiana and isolate putative genes involved in BA biosynthesis. De novo assembly generated 57,322 unique sequences, including 15,217 contigs and 42,105 singletons. From the unique sequences, we selected six genes exhibiting high similarity to genes encoding L-phenylalanine ammonia lyase, cinnamate:CoA ligase, cinnamoyl-CoA hydratase-dehydrogenase, 3-ketoacyl-CoA thiolase, benzoyl-CoA:benzyl alcohol O-benzoyltransferase, and benzaldehyde dehydrogenase. Each of these enzymes might be involved in BA biosynthesis. Real-time PCR (qPCR) analysis revealed that these six genes were highly transcribed in the aerial organs of P. davidiana, particularly in leaves. Treating the leaves of in vitro cultured plants with methyl jasmonate (MeJA) strongly enhanced the mRNA accumulation of all 6 genes, and this treatment also clearly enhanced the accumulation of BA, SA, salicyl alcohol, benzyl alcohol, benzyl benzoate, and benzaldehyde but not salicin. Our study shows that P. davidiana may possess a CoA-dependent β-oxidative BA synthesis pathway. We also identified a relationship between the transcription of these genes and the accumulation of benzenoids, including BA and SA, which are highly responsive to the defense signaling molecule (MeJA).

Indexed as

AcetatesAcyl Coenzyme AAldehyde OxidoreductasesBenzoic AcidCyclopentanesOxylipinsPhenylalanine Ammonia-LyasePlant CellsPlant LeavesPlant ProteinsPopulusReal-Time Polymerase Chain ReactionRNA, PlantSequence Analysis, RNATranscriptome3-ketohexanoyl-coenzyme AAcetatesAcyl Coenzyme AAldehyde Oxidoreductasesbenzaldehyde dehydrogenase (NAD+)Benzoic AcidCyclopentanesmethyl jasmonateOxylipinsPhenylalanine Ammonia-LyasePlant ProteinsRNA, PlantBenzoic acid biosynthesisde novo sequencingPopulus davidianaTranscriptome analysis

Identifiers

PMID29129016
OpenAlexW2767412756

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.