Evidence map›Paper›PMID 29128334›Full record

ArticleCell systems2017

A Map of Human Mitochondrial Protein Interactions Linked to Neurodegeneration Reveals New Mechanisms of Redox Homeostasis and NF-κB Signaling.

Ramy H Malty, Hiroyuki Aoki, Ashwani Kumar, Sadhna Phanse, Shahreen Amin, Qingzhou Zhang, Zoran Minic, Florian Goebels, Gabriel Musso, Zhuoran Wu and 18 more

Open access · bronzeAbstract read
In one paragraph

Article in Cell systems, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 51 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Review
  15. Review
  16. Review
  17. Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

28 authors at 10 institutions in 3 countries.

Ramy H MaltyDepartment of Biochemistry, University of Regina, Regina, SK S4S 0A2, Canada.
Hiroyuki AokiDepartment of Biochemistry, University of Regina, Regina, SK S4S 0A2, Canada.
Ashwani KumarDepartment of Computer Science, University of Regina, Regina, SK S4S 0A2, Canada.
Sadhna PhanseDepartment of Biochemistry, University of Regina, Regina, SK S4S 0A2, Canada.
Shahreen AminDepartment of Biochemistry, University of Regina, Regina, SK S4S 0A2, Canada.
Qingzhou ZhangDepartment of Biochemistry, University of Regina, Regina, SK S4S 0A2, Canada.
Zoran MinicDepartment of Biochemistry, University of Regina, Regina, SK S4S 0A2, Canada.
Florian GoebelsThe Donnelly Centre, University of Toronto, Toronto, ON M5S 3E1, Canada.
Gabriel MussoDepartment of Medicine, Harvard Medical School and Cardiovascular Division, Brigham and Women's Hospital, Boston, MA 02115, USA.
Zhuoran WuDepartment of Biochemistry, University of Regina, Regina, SK S4S 0A2, Canada.
Hosam Abou-TokDepartment of Biochemistry, University of Regina, Regina, SK S4S 0A2, Canada.
Michael MeyerDepartment of Biological Statistics and Computational Biology, Cornell University, Ithaca, NY 14853, USA.
Viktor DeinekoDepartment of Biochemistry, University of Regina, Regina, SK S4S 0A2, Canada.
Sandy KassirDepartment of Biochemistry, University of Regina, Regina, SK S4S 0A2, Canada.
Vishaldeep SidhuDepartment of Biochemistry, University of Regina, Regina, SK S4S 0A2, Canada.
Matthew JessulatDepartment of Biochemistry, University of Regina, Regina, SK S4S 0A2, Canada.
Nichollas E ScottDepartment of Biochemistry and Molecular Biology, University of British Columbia, Vancouver, BC V6T 1Z3, Canada.
Xuejian XiongHospital for Sick Children, 21-9830 PGCRL, 686 Bay Street, Toronto, ON M5G 0A4, Canada.
James VlasblomDepartment of Biochemistry, University of Regina, Regina, SK S4S 0A2, Canada.
Bhanu PrasadDepartment of Medicine, Regina Qu'Appelle Health Region, Regina, SK S4P 0W5, Canada.
Leonard J FosterDepartment of Biochemistry and Molecular Biology, University of British Columbia, Vancouver, BC V6T 1Z3, Canada.
Tiziana AlberioDepartment of Science and High Technology, Center of Neuroscience, University of Insubria, Via Alberto da Giussano 12, Busto Arsizio I-21052, Italy.
Barbara GaravagliaMolecular Neurogenetics Unit, IRCCS Foundation C. Besta Neurological Institute, via L. Temolo, 4, 20126 Milan, Italy.
Haiyuan YuDepartment of Biological Statistics and Computational Biology, Cornell University, Ithaca, NY 14853, USA.
Gary D BaderThe Donnelly Centre, University of Toronto, Toronto, ON M5S 3E1, Canada.
Ken NakamuraGladstone Institute of Neurological Disease, San Francisco, CA 94158, USA.
John ParkinsonHospital for Sick Children, 21-9830 PGCRL, 686 Bay Street, Toronto, ON M5G 0A4, Canada.
Mohan BabuDepartment of Biochemistry, University of Regina, Regina, SK S4S 0A2, Canada. Electronic address: mohan.babu@uregina.ca.
University of Regina · CACornell University · USHospital for Sick Children · CAUniversity of British Columbia · CAUniversity of Toronto · CAFondazione IRCCS Istituto Neurologico Carlo Besta · ITGladstone Institutes · USHarvard University · USRegina Qu'Appelle Health Region · CAUniversity of Insubria · IT

Funding

TR&D 3 - Network Guided Machine LearningP41GM103504 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI IDEKER, TREY · 2012 to 2024
$17.3M
Towards a comprehensive protein interactome network in Schizosaccharomyces pombeR01GM097358 · NIGMS · CORNELL UNIVERSITY · PI YU, HAIYUAN · 2012 to 2016
$1.7M
Towards a comprehensive multiscale 3D human interactome networkR01GM124559 · NIGMS · CORNELL UNIVERSITY · PI YU, HAIYUAN · 2017 to 2020
$1.5M
Supplement to: PHYSICAL AND FUNCTIONAL SYSTEMS ANALYSIS OF MAMMALIAN MITOCHONDRIAR01GM106019 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI BABU, MOHAN, NUNNARI, JODI M. · 2013 to 2016
$954k
CIHR 132191CIHR FDN-154318CIHR MOP-125952CIHR MOP-77688CIHR MSH-130178CIHR RSN-124512NIGMS NIH HHS P41 GM103504NIGMS NIH HHS R01 GM097358NIGMS NIH HHS R01 GM106019NIGMS NIH HHS R01 GM124559
6 · The paper itself

Abstract

Mitochondrial protein (MP) dysfunction has been linked to neurodegenerative disorders (NDs); however, the discovery of the molecular mechanisms underlying NDs has been impeded by the limited characterization of interactions governing MP function. Here, using mass spectrometry (MS)-based analysis of 210 affinity-purified mitochondrial (mt) fractions isolated from 27 epitope-tagged human ND-linked MPs in HEK293 cells, we report a high-confidence MP network including 1,964 interactions among 772 proteins (>90% previously unreported). Nearly three-fourths of these interactions were confirmed in mouse brain and multiple human differentiated neuronal cell lines by primary antibody immunoprecipitation and MS, with many linked to NDs and autism. We show that the SOD1-PRDX5 interaction, critical for mt redox homeostasis, can be perturbed by amyotrophic lateral sclerosis-linked SOD1 allelic variants and establish a functional role for ND-linked factors coupled with IκBɛ in NF-κB activation. Our results identify mechanisms for ND-linked MPs and expand the human mt interaction landscape.

Indexed as

AnimalsAutistic DisorderBrainHEK293 CellsHumansMass SpectrometryMiceMitochondriaMitochondrial ProteinsNeurodegenerative DiseasesNeuronsNF-kappa BOxidation-ReductionProtein Interaction MapsMitochondrial ProteinsNF-kappa B

Identifiers

PMID29128334
PMCPMC5746455
OpenAlexW2767496049

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.