Evidence map›Paper›PMID 29125739›Full record

ArticleACS synthetic biology2018

Yield Improvement of the Anti-MRSA Antibiotics WAP-8294A by CRISPR/dCas9 Combined with Refactoring Self-Protection Genes in Lysobacter enzymogenes OH11.

Lingjun Yu, Wei Su, Paul D Fey, Fengquan Liu, Liangcheng Du

Open access · greenAbstract read
In one paragraph

Article in ACS synthetic biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. The First Homologous Expression System for the β-Lytic Protease ofInternational journal of molecular sciences · 2022
    Article
  7. Review
  8. Frontiers in microbiology · 2022
    Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Lingjun YuInstitute of Plant Protection, Jiangsu Academy of Agricultural Sciences , Nanjing, 210014, China.
Wei SuDepartment of Chemistry, University of Nebraska-Lincoln , Lincoln, Nebraska 68588, United States.
Paul D FeyDepartment of Pathology and Microbiology, University of Nebraska Medical Center , Omaha, Nebraska 68198-5900, United States.
Fengquan LiuInstitute of Plant Protection, Jiangsu Academy of Agricultural Sciences , Nanjing, 210014, China.
Liangcheng DuDepartment of Chemistry, University of Nebraska-Lincoln , Lincoln, Nebraska 68588, United States.ORCID 0000-0003-4048-1008
University of Nebraska–Lincoln · USJiangsu Academy of Agricultural Sciences · CNUniversity of Nebraska Medical Center · US

Funding

Discovering New Anti-Infective Agents from LysobacterR01AI097260 · NIAID · UNIVERSITY OF NEBRASKA LINCOLN · PI DU, LIANGCHENG · 2012 to 2015
$839k
NIAID NIH HHS R01 AI097260
6 · The paper itself

Abstract

The cyclic lipodepsipeptides WAP-8294A are antibiotics with potent activity against methicillin-resistant Staphylococcus aureus (MRSA). One member of this family, WAP-8294A2 (Lotilibcin), was in clinical trials due to its high activity and distinct chemistry. However, WAP-8294A compounds are produced in a very low yield by Lysobacter and only under very stringent conditions. Improving WAP-8294A yield has become very critical for research and application of these anti-MRSA compounds. Here, we report a strategy to increase WAP-8294A production. We first used the CRISPR/dCas9 system to increase the expression of five cotranscribed genes (orf1-5) in the WAP gene cluster, by fusing the omega subunit of RNA polymerase with dCas9 that targets the operon's promoter region. This led to the transcription of the genes increased by 5-48 folds in strain dCas9-ω3. We then refactored four putative self-protection genes (orf6, orf7, orf9 and orf10) by reorganizing them into an operon under the control of a strong Lysobacter promoter, P

Indexed as

Anti-Bacterial AgentsChromatography, High Pressure LiquidCRISPR-Cas SystemsDepsipeptidesGram-Positive BacteriaLysobacterMass SpectrometryMethicillin-Resistant Staphylococcus aureusMicrobial Sensitivity TestsMultigene FamilyPromoter Regions, GeneticTranscriptional ActivationAnti-Bacterial AgentsDepsipeptideslotilibcinantibioticsCRISPR/dCas9gene refactoringLysobacternatural productsWAP-8294A

Identifiers

PMID29125739
PMCPMC5775038
OpenAlexW2767390403

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.