Evidence map›Paper›PMID 29124135›Full record

ArticleBiochemistry and biophysics reports2015

Influence of chemical denaturants on the activity, fold and zinc status of anthrax lethal factor.

Suet Y Lo, Crystal E Säbel, Jonathan P J Mapletoft, Stefan Siemann

Open access · goldAbstract read
In one paragraph

Article in Biochemistry and biophysics reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Suet Y LoDepartment of Chemistry and Biochemistry, Laurentian University, Sudbury, Ontario, Canada.
Crystal E SäbelBharti School of Engineering, Laurentian University, Sudbury, Ontario, Canada.
Jonathan P J MapletoftDepartment of Chemistry and Biochemistry, Laurentian University, Sudbury, Ontario, Canada.
Stefan SiemannDepartment of Chemistry and Biochemistry, Laurentian University, Sudbury, Ontario, Canada.
Laurentian University · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Anthrax lethal factor (LF) is a zinc-dependent endopeptidase which, through a process facilitated by protective antigen, translocates to the host cell cytosol in a partially unfolded state. In the current report, the influence of urea and guanidine hydrochloride (GdnHCl) on LF׳s catalytic function, fold and metal binding was assessed at neutral pH. Both urea and GdnHCl were found to inhibit LF prior to the onset of unfolding, with the inhibition by the latter denaturant being a consequence of its ionic strength. With the exception of demetallated LF (apoLF) in urea, unfolding, as monitored by tryptophan fluorescence spectroscopy, was found to follow a two-state (native to unfolded) mechanism. Analysis of the metal status of LF with 4-(2-pyridylazoresorcinol) (PAR) following urea or GdnHCl exposure suggests the enzyme to be capable of maintaining its metal ion passed the observed unfolding transition in a chelator-inaccessible form. Although an increase in the concentration of the denaturants eventually allowed the chelator access to the protein׳s zinc ion, such process is not correlated with the release of the metal ion. Indeed, significant dissociation of the zinc ion from LF was not observed even at 6 M urea, and only high concentrations of GdnHCl (>3 M) were capable of inducing the release of the metal ion from the protein. Hence, the current study demonstrates not only the propensity of LF to tightly bind its zinc ion beyond the spectroscopically determined unfolding transition, but also the utility of PAR as a structural probe.

Indexed as

4-(2-pyridylazo)resorcinolCD, circular dichroismChemical denaturantscps, counts per secondDPA, dipicolinic acidEDTA, ethylenediaminetetraacetic acidEF, edema factorLethal factorLF, anthrax lethal factorMWCO, molecular weight cut-offPA, protective antigenPAR, 4-(2-pyridylazo)resorcinolProtein foldingSASA, solvent-accessible surface areaSOD, superoxide dismutaseS-pNA, lethal factor substrateTryptophan fluorescenceZincZnLF, zinc-containing lethal factor

Identifiers

PMID29124135
PMCPMC5668564
OpenAlexW1984654825

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.