ArticleFrontiers in plant science2017
Association Mapping of Ferrous, Zinc, and Aluminum Tolerance at the Seedling Stage in
Article in Frontiers in plant science, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.
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Who cites it
23 citing papers in PubMed, 54 citations in OpenAlex.
- CRISPR/Cas9-mediated knockout of ZmHMA3 reveals its essential role in zinc homeostasis and high-zinc stress tolerance in maize.Scientific reports · 2026Article
- Genomic dissection of iron toxicity tolerance in rice identifies key loci, candidate genes, and associated haplotypes.Scientific reports · 2026Article
- MAGIC populations: a next-generation framework for dissecting complex quantitative traits and accelerating molecular breeding in crops.Frontiers in plant science · 2026Review
- Identification of Advantaged Genes for Low-Nitrogen-Tolerance-Related Traits in Rice Using a Genome-Wide Association Study.International journal of molecular sciences · 2025Article
- Natural variation of TBR confers plant zinc toxicity tolerance through root cell wall pectin methylesterification.Nature communications · 2024Article
- Candidate Genes and Favorable Haplotypes Associated with Iron Toxicity Tolerance in Rice.International journal of molecular sciences · 2024Article
- Genome-Wide Association Study Identifies Resistance Loci for Bacterial Blight in a Collection of Asian TemperateInternational journal of molecular sciences · 2023Article
- Mapping QTLs and gene validation studies for MgFrontiers in plant science · 2023Article
- Genome-Wide Association Study of Zinc Toxicity Tolerance within a Rice Core Collection (Plants (Basel, Switzerland) · 2022Article
- Multi-Trait Genomic Prediction Models Enhance the Predictive Ability of Grain Trace Elements in Rice.Frontiers in genetics · 2022Article
- Genetic background- and environment-independent QTL and candidate gene identification of appearance quality in three MAGIC populations of rice.Frontiers in plant science · 2022Article
- Genetic architecture of AlEcotoxicology (London, England) · 2021Article
- Genetic dissection of heterosis of indica-japonica by introgression line, recombinant inbred line and their testcross populations.Scientific reports · 2021Article
- Genome-Wide Association Study of Local Thai Indica Rice Seedlings Exposed to Excessive Iron.Plants (Basel, Switzerland) · 2021Article
- Genome-Wide Association Study Dissects Resistance Loci against Bacterial Blight in a Diverse Rice Panel from the 3000 Rice Genomes Project.Rice (New York, N.Y.) · 2021Article
- Validation of Genes Affecting Rice Grain Zinc Content Through Candidate Gene-Based Association Analysis.Frontiers in genetics · 2021Article
- You Had Me at "MAGIC"!: Four Barley MAGIC Populations Reveal Novel Resistance QTL for Powdery Mildew.Genes · 2020Article
- Construction and integration of genetic linkage maps from three multi-parent advanced generation inter-cross populations in rice.Rice (New York, N.Y.) · 2020Article
- Article
- Genome-Wide Association Study of Grain Size Traits inFrontiers in plant science · 2020Article
Corrections and comments
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Authors and funding
6 authors at 5 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Excessive amounts of metal are toxic and severely affect plant growth and development. Understanding the genetic control of metal tolerance is crucial to improve rice resistance to Fe, Zn, and Al toxicity. The multi-parent advanced generation inter-cross (MAGIC) populations were genotyped using a 55 K rice SNP array and screened at the seedling stage for Fe, Zn, and Al toxicity using a hydroponics system. Association analysis was conducted by implementing a mixed linear model (MLM) for each of the five MAGIC populations double cross DC1 (founders were SAGC-08, HHZ5-SAL9-Y3-Y1, BP1976B-2-3-7-TB-1-1, PR33282-B-8-1-1-1-1-1), double cross DC2 (founders of double cross were FFZ1, CT 16658-5-2-2SR-2-3-6MP, IR 68, IR 02A127), eight parents population 8way (founders were SAGC-08, HHZ5-SAL9-Y3-Y1, BP1976B-2-3-7-TB-1-1, PR33282-B-8-1-1-1-1-1, FFZ1, CT 16658-5-2-2SR-2-3-6MP, IR 68, IR 02A127), DC12 (DC1+DC2) and rice multi-parent recombinant inbred line population RMPRIL (DC1+DC2+8way). A total of 21, 30, and 21 QTL were identified for Fe, Zn, and Al toxicity tolerance, respectively. For multi tolerance (MT) as Fe, Zn, and Al tolerance-related traits, three genomic regions, MT1.1 (chr.1: 35.4-36.3 Mb), MT1.2 (chr.1: 35.4-36.3 Mb), and MT3.2 (chr.3: 35.4-36.2 Mb) harbored QTL. The chromosomal regions MT2.1 (chr.2: 2.4-2.8 Mb), MT2.2 (chr.2: 24.5-25.8 Mb), MT4 (chr.4: 1.2 Mb Mb), MT8.1 (chr.8: 0.7-0.9 Mb), and MT8.2 (chr.8: 2.2-2.4 Mb) harbored QTL for Fe and Zn tolerance, while MT2.3 (chr.2: 30.5-31.6 Mb), MT3.1 (chr.3: 12.5-12.8 Mb), and MT6 (chr.6: 2.0-3.0 Mb) possessed QTL for Al and Zn tolerance. The chromosomal region MT9.1 (chr.9: 14.2-14.7 Mb) possessed QTL for Fe and Al tolerance. A total of 11 QTL were detected across different MAGIC populations and 12 clustered regions were detected under different metal conditions, suggesting that these genomic regions might constitute valuable regions for further marker-assisted selection (MAS) in breeding programs.
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