Evidence map›Paper›PMID 29123330›Full record

ArticleKnowledge and information systems2017

Markov Logic Networks for Adverse Drug Event Extraction from Text.

Sriraam Natarajan, Vishal Bangera, Tushar Khot, Jose Picado, Anurag Wazalwar, Vitor Santos Costa, David Page, Michael Caldwell

Open access · greenAbstract read
In one paragraph

Article in Knowledge and information systems, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 2 countries.

Sriraam NatarajanIndiana University, University of Wisconsin-Madison.
Vishal BangeraIndiana University, University of Wisconsin-Madison.
Tushar KhotIndiana University, University of Wisconsin-Madison.
Jose PicadoIndiana University, Oregon State University.
Anurag WazalwarIndiana University, University of Wisconsin-Madison.
Vitor Santos CostaIndiana University, University of Porto.
David PageIndiana University, University of Wisconsin-Madison.
Michael CaldwellIndiana University, Marshfield Clinic.
Indiana University Bloomington · USUniversity of Wisconsin–Madison · USMarshfield Clinic · USOregon State University · USUniversidade do Porto · PT

Funding

Machine Learning for Identifying Adverse Drug EventsR01GM097618 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI CALDWELL, MICHAEL DEFOIX, HANSEN, RICHARD A. · 2011 to 2018
$3.8M
NIGMS NIH HHS R01 GM097618
6 · The paper itself

Abstract

Adverse drug events (ADEs) are a major concern and point of emphasis for the medical profession, government, and society. A diverse set of techniques from epidemiology, statistics, and computer science are being proposed and studied for ADE discovery from observational health data (e.g., EHR and claims data), social network data (e.g., Google and Twitter posts), and other information sources. Methodologies are needed for evaluating, quantitatively measuring, and comparing the ability of these various approaches to accurately discover ADEs. This work is motivated by the observation that text sources such as the Medline/Medinfo library provide a wealth of information on human health. Unfortunately, ADEs often result from unexpected interactions, and the connection between conditions and drugs is not explicit in these sources. Thus, in this work we address the question of whether we can quantitatively estimate relationships between drugs and conditions from the medical literature. This paper proposes and studies a state-of-the-art NLP-based extraction of ADEs from text.

Indexed as

Adverse Drug Event ExtractionMarkov Logic NetworksNatural Language ProcessingStatistical Relational Learning

Identifiers

PMID29123330
PMCPMC5673137
OpenAlexW2510045023

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.