ArticleNature communications2017
Natural variation of YELLOW SEEDLING1 affects photosynthetic acclimation of Arabidopsis thaliana.
Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.
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29 citing papers in PubMed, 60 citations in OpenAlex.
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- LeTra: a leaf tracking workflow based on convolutional neural networks and intersection over union.Plant methods · 2024Article
- Genome-wide association study unveils ascorbate regulation by PAS/LOV PROTEIN during high light acclimation.Plant physiology · 2023Article
- A Single Nucleotide Variation ofInternational journal of molecular sciences · 2023Article
- The effects of different daily irradiance profiles on Arabidopsis growth, with special attention to the role of PsbS.Frontiers in plant science · 2023Article
- The genome sequence of Hirschfeldia incana, a new Brassicaceae model to improve photosynthetic light-use efficiency.The Plant journal : for cell and molecular biology · 2022Article
- Overexpression ofPhysiology and molecular biology of plants : an international journal of functional plant biology · 2022Article
- Genetics as a key to improving crop photosynthesis.Journal of experimental botany · 2022Article
- Genome-wide association of the metabolic shifts underpinning dark-induced senescence in Arabidopsis.The Plant cell · 2022Article
- Differences in PIScientific reports · 2021Article
- Genome-Wide Association Study of QTLs Conferring Resistance to Bacterial Leaf Streak in Rice.Plants (Basel, Switzerland) · 2021Article
- Cotton Fiber Development Requires the Pentatricopeptide Repeat Protein GhIm for Splicing of Mitochondrial nad7 mRNA.Genetics · 2021Article
- Indirect Export of Reducing Equivalents From the Chloroplast to Resupply NADP for CFrontiers in plant science · 2021Review
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Authors and funding
6 authors at 2 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Exploiting genetic variation for more efficient photosynthesis is an underexplored route towards new crop varieties. This study demonstrates the genetic dissection of higher plant photosynthesis efficiency down to the genomic DNA level, by confirming that allelic sequence variation at the Arabidopsis thaliana YELLOW SEEDLING1 (YS1) gene explains natural diversity in photosynthesis acclimation to high irradiance. We use a genome-wide association study to identify quantitative trait loci (QTLs) involved in the Arabidopsis photosynthetic acclimation response. Candidate genes underlying the QTLs are prioritized according to functional clues regarding gene ontology, expression and function. Reverse genetics and quantitative complementation confirm the candidacy of YS1, which encodes a pentatrico-peptide-repeat (PPR) protein involved in RNA editing of plastid-encoded genes (anterograde signalling). Gene expression analysis and allele sequence comparisons reveal polymorphisms in a light-responsive element in the YS1 promoter that affect its expression, and that of its downstream targets, resulting in the variation in photosynthetic acclimation.
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