Evidence map›Paper›PMID 29123031›Full record

ArticleThe Journal of biological chemistry2018

Structure-function characterization of three human antibodies targeting the vaccinia virus adhesion molecule D8.

Michael H Matho, Andrew Schlossman, Iuliia M Gilchuk, Greg Miller, Zbigniew Mikulski, Matthias Hupfer, Jing Wang, Aruna Bitra, Xiangzhi Meng, Yan Xiang and 8 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact, top 87% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
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  12. Biological Characteristics and Pathogenesis of Monkeypox Virus: An Overview.Advances in experimental medicine and biology · 2024
    Review
  13. Review
  14. Article
  15. Article
  16. Review
  17. Functional characterization of hypothetical proteins from Monkeypox virus.Journal, genetic engineering & biotechnology · 2023
    Article
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 6 institutions in 2 countries.

Michael H MathoDivision of Cell Biology, La Jolla, California 92037.
Andrew SchlossmanDivision of Cell Biology, La Jolla, California 92037.
Iuliia M GilchukDepartment of Pediatrics, Pathology, Microbiology and Immunology, Vanderbilt University Medical Center, Nashville, Tennessee 37232.
Greg MillerDivision of Chemistry and Chemical Engineering, Howard Hughes Medical Institute, California Institute of Technology, Pasadena, California 91126.
Zbigniew MikulskiDepartment of Pediatrics, Pathology, Microbiology and Immunology, Vanderbilt University Medical Center, Nashville, Tennessee 37232.
Matthias HupferDivision of Cell Biology, La Jolla, California 92037.
Jing WangDivision of Cell Biology, La Jolla, California 92037.
Aruna BitraDivision of Cell Biology, La Jolla, California 92037.
Xiangzhi MengDepartment of Microbiology, Immunology and Molecular Genetics, University of Texas Health Science Center, San Antonio, Texas 78229.
Yan XiangDepartment of Microbiology, Immunology and Molecular Genetics, University of Texas Health Science Center, San Antonio, Texas 78229.
Tom KaeverDivision of Vaccine Discovery, La Jolla Institute for Allergy and Immunology, La Jolla, California 92037.
Tzanko DoukovStanford Synchrotron Radiation Lightsource, SLAC, Menlo Park, California 94025.
Klaus LeyDivision of Inflammation Biology, La Jolla, California 92037.
Shane CrottyDivision of Vaccine Discovery, La Jolla Institute for Allergy and Immunology, La Jolla, California 92037; University of California San Diego, La Jolla, California 92037.
Bjoern PetersDivision of Vaccine Discovery, La Jolla Institute for Allergy and Immunology, La Jolla, California 92037.
Linda C Hsieh-WilsonDivision of Chemistry and Chemical Engineering, Howard Hughes Medical Institute, California Institute of Technology, Pasadena, California 91126.
James E CroweDepartment of Pediatrics, Pathology, Microbiology and Immunology, Vanderbilt University Medical Center, Nashville, Tennessee 37232.
Dirk M ZajoncDivision of Cell Biology, La Jolla, California 92037; Department of Internal Medicine, Faculty of Medicine and Health Sciences, Ghent University, 9000 Ghent, Belgium. Electronic address: dzajonc@lji.org.
La Jolla Institute for Immunology · USVanderbilt University Medical Center · USCalifornia Institute of Technology · USThe University of Texas Health Science Center at San Antonio · USGhent University · BEStanford Synchrotron Radiation Lightsource · US

Funding

X-ray Absorption Spectroscopy (XAS) pp.711-759P41GM103393 · NIGMS · STANFORD UNIVERSITY · PI HODGSON, KEITH O · 2012 to 2019
$30.6M
A chemical approach to elucidating the structure-function relationships of chondronitin sulfate glycosaminoglycansR01GM093627 · NIGMS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI HSIEH-WILSON, LINDA C · 2010 to 2018
$3.6M
NIAID NIH HHS HHSN272200900047CNIAID NIH HHS HHSN272200900048CNIAID NIH HHS HHSN272201400024CNIGMS NIH HHS P41 GM103393NIGMS NIH HHS R01 GM093627
6 · The paper itself

Abstract

Vaccinia virus (VACV) envelope protein D8 is one of three glycosaminoglycan adhesion molecules and binds to the linear polysaccharide chondroitin sulfate (CS). D8 is also a target for neutralizing antibody responses that are elicited by the smallpox vaccine, which has enabled the first eradication of a human viral pathogen and is a useful model for studying antibody responses. However, to date, VACV epitopes targeted by human antibodies have not been characterized at atomic resolution. Here, we characterized the binding properties of several human anti-D8 antibodies and determined the crystal structures of three VACV-mAb variants, VACV-66, VACV-138, and VACV-304, separately bound to D8. Although all these antibodies bound D8 with high affinity and were moderately neutralizing in the presence of complement, VACV-138 and VACV-304 also fully blocked D8 binding to CS-A, the low affinity ligand for D8. VACV-138 also abrogated D8 binding to the high-affinity ligand CS-E, but we observed residual CS-E binding was observed in the presence of VACV-304. Analysis of the VACV-138- and VACV-304-binding sites along the CS-binding crevice of D8, combined with different efficiencies of blocking D8 adhesion to CS-A and CS-E allowed us to propose that D8 has a high- and low-affinity CS-binding region within its central crevice. The crevice is amenable to protein engineering to further enhance both specificity and affinity of binding to CS-E. Finally, a wild-type D8 tetramer specifically bound to structures within the developing glomeruli of the kidney, which express CS-E. We propose that through structure-based protein engineering, an improved D8 tetramer could be used as a potential diagnostic tool to detect expression of CS-E, which is a possible biomarker for ovarian cancer.

Indexed as

AntibodiesAntibodies, MonoclonalAntibodies, NeutralizingAntibodies, ViralAntibody FormationAntigens, ViralCell Adhesion MoleculesCrystallography, X-RayEnzyme-Linked Immunosorbent AssayEpitopesHumansNeutralization TestsProtein BindingStructure-Activity RelationshipVaccinia virusViral Envelope ProteinsAntibodiesAntibodies, MonoclonalAntibodies, NeutralizingAntibodies, ViralAntigens, ViralCell Adhesion MoleculesEpitopesViral Envelope Proteinsantibodyglycosaminoglycanprotein crystallizationprotein structurevaccineviral proteinX-ray crystallography

Identifiers

PMID29123031
PMCPMC5766908
OpenAlexW2768094501

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.