Evidence map›Paper›PMID 29120602›Full record

ArticleACS nano2017

Porphyrin-Assisted Docking of a Thermophage Portal Protein into Lipid Bilayers: Nanopore Engineering and Characterization.

Benjamin Cressiot, Sandra J Greive, Wei Si, Tomas C Pascoa, Mehrnaz Mojtabavi, Maria Chechik, Huw T Jenkins, Xueguang Lu, Ke Zhang, Aleksei Aksimentiev and 2 more

Abstract read
In one paragraph

Article in ACS nano, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 27 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Review
  5. Biological Nanopores: Engineering on Demand.Life (Basel, Switzerland) · 2021
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 3 countries.

Benjamin CressiotORCID 0000-0001-9319-3152
Sandra J GreiveYork Structural Biology Laboratory, Department of Chemistry, University of York , York YO10 5DD, United Kingdom.
Wei SiDepartment of Physics, University of Illinois at Urbana-Champaign , Urbana, Illinois 61801, United States.
Tomas C PascoaYork Structural Biology Laboratory, Department of Chemistry, University of York , York YO10 5DD, United Kingdom.
Mehrnaz Mojtabavi
Maria ChechikYork Structural Biology Laboratory, Department of Chemistry, University of York , York YO10 5DD, United Kingdom.
Huw T JenkinsYork Structural Biology Laboratory, Department of Chemistry, University of York , York YO10 5DD, United Kingdom.ORCID 0000-0002-3302-6966
Xueguang Lu
Aleksei AksimentievDepartment of Physics, University of Illinois at Urbana-Champaign , Urbana, Illinois 61801, United States.ORCID 0000-0002-6042-8442
Alfred A AntsonYork Structural Biology Laboratory, Department of Chemistry, University of York , York YO10 5DD, United Kingdom.
Northeastern University · USUniversity of York · GBUniversity of Illinois Urbana-Champaign · US

Funding

WHOLE CELL SIMULATIONP41GM104601 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI TAJKHORSHID, EMAD · 2012 to 2021
$19.0M
Plasmonic nanopores for trapping, controlled motion and sequencing of DNAR01HG007406 · NHGRI · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI AKSIMENTIEV, ALEKSEI · 2013 to 2016
$2.4M
NHGRI NIH HHS R01 HG007406NIGMS NIH HHS P41 GM104601Wellcome Trust 098230Wellcome Trust 101528
6 · The paper itself

Abstract

Nanopore-based sensors for nucleic acid sequencing and single-molecule detection typically employ pore-forming membrane proteins with hydrophobic external surfaces, suitable for insertion into a lipid bilayer. In contrast, hydrophilic pore-containing molecules, such as DNA origami, have been shown to require chemical modification to favor insertion into a lipid environment. In this work, we describe a strategy for inserting polar proteins with an inner pore into lipid membranes, focusing here on a circular 12-subunit assembly of the thermophage G20c portal protein. X-ray crystallography, electron microscopy, molecular dynamics, and thermal/chaotrope denaturation experiments all find the G20c portal protein to have a highly stable structure, favorable for nanopore sensing applications. Porphyrin conjugation to a cysteine mutant in the protein facilitates the protein's insertion into lipid bilayers, allowing us to probe ion transport through the pore. Finally, we probed the portal interior size and shape using a series of cyclodextrins of varying sizes, revealing asymmetric transport that possibly originates from the portal's DNA-ratchet function.

Indexed as

Molecular Docking SimulationNanotechnologyTemperatureCapsid ProteinsCrystallography, X-RayHydrophobic and Hydrophilic InteractionsLipid BilayersModels, MolecularMolecular StructureNanoporesParticle SizePorphyrinsSurface PropertiesThermus thermophilusCapsid ProteinsLipid BilayersPorphyrinselectrical detectionelectroosmosislipid bilayerporphyrinportal proteinprotein nanoporesingle molecule

Identifiers

PMID29120602
PMCPMC5963890
OpenAlexW2767535465

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.