Evidence map›Paper›PMID 29118823›Full record

ArticlePlant methods2017

Sequence analysis of cultivated strawberry (

Tomohiro Yanagi, Kenta Shirasawa, Mayuko Terachi, Sachiko Isobe

Abstract read
In one paragraph

Article in Plant methods, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Chromosome-levelBreeding science · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Tomohiro YanagiFaculty of Agriculture, Kagawa University, Miki-cho, Kita-gun, Kagawa 761-0795 Japan.
Kenta ShirasawaKazusa DNA Research Institute, Kazusa-Kamatari, Kisarazu, Chiba Japan.
Mayuko TerachiFaculty of Agriculture, Kagawa University, Miki-cho, Kita-gun, Kagawa 761-0795 Japan.
Sachiko IsobeKazusa DNA Research Institute, Kazusa-Kamatari, Kisarazu, Chiba Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundCultivated strawberry (

resultsThree hundred and ten somatic chromosomes of the Japanese octoploid strawberry 'Reiko' were individually selected under a light microscope using a microdissection system. DNA from 288 of the dissected chromosomes was successfully amplified using a DNA amplification kit. Using next-generation sequencing, we decoded the base sequences of the amplified DNA segments, and on the basis of mapping, we identified DNA sequences from 144 samples that were best matched to the reference genomes of the octoploid strawberry,

conclusionWe demonstrated an efficient method for sequence analysis of allopolyploid plants using microdissected single chromosomes. On the basis of our results, we believe that whole-genome analysis of allopolyploid plants can be enhanced using methodology that employs microdissected single chromosomes.

Indexed as

AllopolyploidChromosome microdissectionMappingSequence analysisStrawberry (Fragaria × ananassa Duch.)

Identifiers

PMID29118823
PMCPMC5663147

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.