Evidence map›Paper›PMID 29118819›Full record

ArticlePlant methods2017

A method for automatic segmentation and splitting of hyperspectral images of raspberry plants collected in field conditions.

Dominic Williams, Avril Britten, Susan McCallum, Hamlyn Jones, Matt Aitkenhead, Alison Karley, Ken Loades, Ankush Prashar, Julie Graham

Abstract read
In one paragraph

Article in Plant methods, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. A Survey of Robotic Harvesting Systems and Enabling Technologies.Journal of intelligent & robotic systems · 2023
    Review
  5. Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Dominic WilliamsJames Hutton Limited, Invergowrie, Dundee, DD2 5DA UK.ORCID 0000-0002-5367-2666
Avril BrittenJames Hutton Limited, Invergowrie, Dundee, DD2 5DA UK.
Susan McCallumJames Hutton Institute, Invergowrie, Dundee, DD2 5DA UK.
Hamlyn JonesDivision of Plant Sciences, University of Dundee at the James Hutton Institute, Dundee, UK.
Matt AitkenheadJames Hutton Institute, Invergowrie, Dundee, DD2 5DA UK.
Alison KarleyJames Hutton Institute, Invergowrie, Dundee, DD2 5DA UK.
Ken LoadesJames Hutton Institute, Invergowrie, Dundee, DD2 5DA UK.
Ankush PrasharSchool of Agriculture, Food and Rural Development, Newcastle University, Newcastle upon Tyne, NE1 7RU UK.
Julie GrahamJames Hutton Institute, Invergowrie, Dundee, DD2 5DA UK.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hyperspectral imaging is a technology that can be used to monitor plant responses to stress. Hyperspectral images have a full spectrum for each pixel in the image, 400-2500 nm in this case, giving detailed information about the spectral reflectance of the plant. Although this technology has been used in laboratory-based controlled lighting conditions for early detection of plant disease, the transfer of such technology to imaging plants in field conditions presents a number of challenges. These include problems caused by varying light levels and difficulties of separating the target plant from its background. Here we present an automated method that has been developed to segment raspberry plants from the background using a selected spectral ratio combined with edge detection. Graph theory was used to minimise a cost function to detect the continuous boundary between uninteresting plants and the area of interest. The method includes automatic detection of a known reflectance tile which was kept constantly within the field of view for all image scans. A method to split images containing rows of multiple raspberry plants into individual plants was also developed. Validation was carried out by comparison of plant height and density measurements with manually scored values. A reasonable correlation was found between these manual scores and measurements taken from the images (r

Indexed as

Field imagingHyperspectral imagingImage segmentationPhenotypingRaspberry

Identifiers

PMID29118819
PMCPMC5664591

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.