Evidence map›Paper›PMID 29118396›Full record

ArticleScientific reports2017

Engineering Saccharomyces cerevisiae for geranylgeraniol overproduction by combinatorial design.

Tian-Qing Song, Ming-Zhu Ding, Fang Zhai, Duo Liu, Hong Liu, Wen-Hai Xiao, Ying-Jin Yuan

Abstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Review
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  7. RewiringMetabolic engineering communications · 2024
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  9. Improved production of TaxolMicrobial cell factories · 2023
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  11. Article
  12. Potential of the Compounds fromMolecules (Basel, Switzerland) · 2022
    Article
  13. Article
  14. Metabolic Engineering ofFrontiers in bioengineering and biotechnology · 2022
    Article
  15. Systematic mining of fungal chimeric terpene synthases using an efficient precursor-providing yeast chassis.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  16. Article
  17. Crocetin Overproduction in EngineeredFrontiers in bioengineering and biotechnology · 2020
    Article
  18. Dynamic Control ofFrontiers in bioengineering and biotechnology · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Tian-Qing SongKey Laboratory of Systems Bioengineering (Ministry of Education), Tianjin University, Tianjin, 300072, P.R. China.
Ming-Zhu DingKey Laboratory of Systems Bioengineering (Ministry of Education), Tianjin University, Tianjin, 300072, P.R. China.
Fang ZhaiKey Laboratory of Systems Bioengineering (Ministry of Education), Tianjin University, Tianjin, 300072, P.R. China.
Duo LiuKey Laboratory of Systems Bioengineering (Ministry of Education), Tianjin University, Tianjin, 300072, P.R. China.
Hong LiuKey Laboratory of Systems Bioengineering (Ministry of Education), Tianjin University, Tianjin, 300072, P.R. China.
Wen-Hai XiaoKey Laboratory of Systems Bioengineering (Ministry of Education), Tianjin University, Tianjin, 300072, P.R. China. wenhai.xiao@tju.edu.cn.
Ying-Jin YuanKey Laboratory of Systems Bioengineering (Ministry of Education), Tianjin University, Tianjin, 300072, P.R. China.ORCID 0000-0003-0553-0089

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Combinatorial design is an effective strategy to acquire the optimal solution in complex systems. In this study, the combined effects of pathway combination, promoters' strength fine-tuning, copy numbers and integration locus variations caused by δ-integration were explored in Saccharomyces cerevisiae using geranylgeraniol (GGOH) production as an example. Two GGOH biosynthetic pathway branches were constructed. In branch 1, GGOH was converted from isopentenyl pyrophosphate (IPP) and farnesyl diphosphate (FPP). In branch 2, GGOH was derived directly from IPP and dimethylallyl pyrophosphate (DMAPP). Regulated by 10 combinations of 11 diverse promoters, a fusion gene BTS1-ERG20, a heterologous geranylgeranyl diphosphate synthase from Sulfolobus acidocaldarius (GGPPSsa) and an endogenous N-terminal truncated gene 3-hydroxyl-3-methylglutaryl-CoA reductase isoenzyme 1 (tHMGR), were incorporated into yeast by δ-integration, leading to a series of GGOH producing strains with yields ranging from 18.45 mg/L to 161.82 mg/L. The yield was further increased to 437.52 mg/L by optimizing the fermentation medium. Consequently, the GGOH yield reached 1315.44 mg/L in a 5-L fermenter under carbon restriction strategy. Our study not only opens large opportunities for downstream diterpenes overproductions, but also demonstrates that pathway optimization based on combinatorial design is a promising strategy to engineer microbes for overproducing natural products with complex structure.

Indexed as

Bacterial ProteinsBiosynthetic PathwaysDiterpenesFarnesyltranstransferaseHemiterpenesHydroxymethylglutaryl-CoA-Reductases, NADP-dependentMetabolic EngineeringOrganophosphorus CompoundsPolyisoprenyl PhosphatesPromoter Regions, GeneticRecombinant Fusion ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSesquiterpenes3,3-dimethylallyl pyrophosphateBacterial ProteinsDiterpenesfarnesyl pyrophosphateFarnesyltranstransferasegeranylgeraniolHemiterpenesHydroxymethylglutaryl-CoA-Reductases, NADP-dependentisopentenyl pyrophosphateOrganophosphorus CompoundsPolyisoprenyl PhosphatesRecombinant Fusion ProteinsSaccharomyces cerevisiae ProteinsSesquiterpenes

Identifiers

PMID29118396
PMCPMC5678108

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.