Evidence map›Paper›PMID 29118143›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2017

Structural basis for arginine methylation-independent recognition of PIWIL1 by TDRD2.

Heng Zhang, Ke Liu, Natsuko Izumi, Haiming Huang, Deqiang Ding, Zuyao Ni, Sachdev S Sidhu, Chen Chen, Yukihide Tomari, Jinrong Min

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
  2. Review
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  4. Article
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  9. Article
  10. Effectors and effects of arginine methylation.Biochemical Society transactions · 2023
    Article
  11. Article
  12. Article
  13. Knockout Gene-Based Evidence for PIWI-Interacting RNA Pathway in Mammals.Frontiers in cell and developmental biology · 2021
    Review
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Structural insights into the sequence-specific recognition of Piwi byProceedings of the National Academy of Sciences of the United States of America · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 3 countries.

Heng ZhangStructural Genomics Consortium, University of Toronto, Toronto, ON M5G 1L7, Canada.
Ke LiuStructural Genomics Consortium, University of Toronto, Toronto, ON M5G 1L7, Canada.
Natsuko IzumiInstitute of Molecular and Cellular Biosciences, The University of Tokyo, Tokyo 113-0032, Japan.
Haiming HuangThe Donnelly Centre, University of Toronto, Toronto, ON M5S 3E1, Canada.
Deqiang DingDepartment of Animal Science, Michigan State University, East Lansing, MI 48824.
Zuyao NiDepartment of Molecular Genetics, University of Toronto, Toronto, ON M5S 1A8, Canada.
Sachdev S SidhuThe Donnelly Centre, University of Toronto, Toronto, ON M5S 3E1, Canada.
Chen ChenDepartment of Animal Science, Michigan State University, East Lansing, MI 48824.
Yukihide TomariInstitute of Molecular and Cellular Biosciences, The University of Tokyo, Tokyo 113-0032, Japan; tomari@iam.u-tokyo.ac.jp jr.min@utoronto.ca.
Jinrong MinStructural Genomics Consortium, University of Toronto, Toronto, ON M5G 1L7, Canada; tomari@iam.u-tokyo.ac.jp jr.min@utoronto.ca.
University of Toronto · CAMichigan State University · USThe University of Tokyo · JPStructural Genomics Consortium · CA

Funding

Tudor Domain Proteins in Germline Genome DefenseR01HD084494 · NICHD · MICHIGAN STATE UNIVERSITY · PI CHEN, CHEN · 2015 to 2023
$3.0M
NICHD NIH HHS R01 HD084494Wellcome Trust
6 · The paper itself

Abstract

The P-element-induced wimpy testis (PIWI)-interacting RNA (piRNA) pathway plays a central role in transposon silencing and genome protection in the animal germline. A family of Tudor domain proteins regulates the piRNA pathway through direct Tudor domain-PIWI interactions. Tudor domains are known to fulfill this function by binding to methylated PIWI proteins in an arginine methylation-dependent manner. Here, we report a mechanism of methylation-independent Tudor domain-PIWI interaction. Unlike most other Tudor domains, the extended Tudor domain of mammalian Tudor domain-containing protein 2 (TDRD2) preferentially recognizes an unmethylated arginine-rich sequence from PIWI-like protein 1 (PIWIL1). Structural studies reveal an unexpected Tudor domain-binding mode for the PIWIL1 sequence in which the interface of Tudor and staphylococcal nuclease domains is primarily responsible for PIWIL1 peptide recognition. Mutations disrupting the TDRD2-PIWIL1 interaction compromise piRNA maturation via 3'-end trimming in vitro. Our work presented here reveals the molecular divergence of the interactions between different Tudor domain proteins and PIWI proteins.

Indexed as

AnimalsArginineArgonaute ProteinsCrystallography, X-RayEpigenesis, GeneticHEK293 CellsHumansMaleMethylationModels, MolecularMutationProtein BindingProtein Processing, Post-TranslationalRNA-Binding ProteinsRNA, Small InterferingSignal TransductionArginineArgonaute ProteinsPIWIL1 protein, humanPiwil1 protein, mouseRNA-Binding ProteinsRNA, Small InterferingTDRKH protein, humanTdrkh protein, mousemethylation-independentpiRNAPIWITDRD2TDRKH

Identifiers

PMID29118143
PMCPMC5703303
OpenAlexW2767273381

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.