Evidence map›Paper›PMID 29117580›Full record

ArticleNeuroImage2018

Discovery and visualization of structural biomarkers from MRI using transport-based morphometry.

Shinjini Kundu, Soheil Kolouri, Kirk I Erickson, Arthur F Kramer, Edward McAuley, Gustavo K Rohde

Open access · greenAbstract read
In one paragraph

Article in NeuroImage, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 33 citations in OpenAlex.

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  10. A Heteromodal Word-Meaning Binding Site in the Visual Word Form Area under Top-Down Frontoparietal Control.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2021
    Article
  11. Article
  12. Enabling early detection of osteoarthritis from presymptomatic cartilage texture maps via transport-based learning.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  13. Trajectories from Distribution-valued Functional Curves: A Unified Wasserstein FrameworkMedical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention · 2020
    Article
  14. Article
  15. Article
  16. Exploratory Population Analysis with Unbalanced Optimal Transport.Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Shinjini KunduMedical Scientist Training Program, University of Pittsburgh, 526 Scaife Hall, 3550 Terrace Street, Pittsburgh, PA 15261, USA. Electronic address: shk71@pitt.edu.
Soheil KolouriISSL Group, HRL Laboratories, Malibu, CA 90265, USA. Electronic address: skolouri@hrl.com.
Kirk I EricksonBrain Aging & Cognitive Health Lab, Department of Psychology, University of Pittsburgh, 3601 Sennot Square, Pittsburgh, PA 15260, USA. Electronic address: kiericks@pitt.edu.
Arthur F KramerBeckman Institute, University of Illinois, 405 North Mathews Ave, Urbana, IL 61801, USA. Electronic address: a-kramer@illinois.edu.
Edward McAuleyExercise Psychology Laboratory, Department of Kinesiology and Community Health, Louise Freer Hall, 906 S Goodwin Avenue, Urbana, IL 61801, USA. Electronic address: emcauley@illinois.edu.
Gustavo K RohdeBiomedical Engineering, Electrical and Computer Engineering, Box 800759, Room 1115, 415 Lane Road (MR5 Building), University of Virginia, Charlottesville, VA 22908, USA. Electronic address: gustavo@virgina.edu.
University of Pittsburgh · USHRL Laboratories (United States) · USUniversity of Illinois Urbana-Champaign · USUniversity of Virginia · US

Funding

Image-derived Spatiotemporal Models of Cellular Organization and PerturbationR01GM090033 · NIGMS · CARNEGIE-MELLON UNIVERSITY · PI MURPHY, ROBERT F, ROHDE, GUSTAVO KUNDE · 2010 to 2018
$2.4M
Proteomic studies of the Hutchison-Gilford ProgeriaR01AG025302 · NIA · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI DJABALI, KARIMA · 2005 to 2008
$1.2M
Influence of Fitness and Cognitive Training on Brain and CognitionR01AG025667 · NIA · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI MCAULEY, EDWARD · 2015 to 2015
$497k
NIA NIH HHS R01 AG025302NIA NIH HHS R01 AG025667NIGMS NIH HHS R01 GM090033
6 · The paper itself

Abstract

Disease in the brain is often associated with subtle, spatially diffuse, or complex tissue changes that may lie beneath the level of gross visual inspection, even on magnetic resonance imaging (MRI). Unfortunately, current computer-assisted approaches that examine pre-specified features, whether anatomically-defined (i.e. thalamic volume, cortical thickness) or based on pixelwise comparison (i.e. deformation-based methods), are prone to missing a vast array of physical changes that are not well-encapsulated by these metrics. In this paper, we have developed a technique for automated pattern analysis that can fully determine the relationship between brain structure and observable phenotype without requiring any a priori features. Our technique, called transport-based morphometry (TBM), is an image transformation that maps brain images losslessly to a domain where they become much more separable. The new approach is validated on structural brain images of healthy older adult subjects where even linear models for discrimination, regression, and blind source separation enable TBM to independently discover the characteristic changes of aging and highlight potential mechanisms by which aerobic fitness may mediate brain health later in life. TBM is a generative approach that can provide visualization of physically meaningful shifts in tissue distribution through inverse transformation. The proposed framework is a powerful technique that can potentially elucidate genotype-structural-behavioral associations in myriad diseases.

Indexed as

AgingModels, TheoreticalAgedBiomarkersBrainHumansImage Interpretation, Computer-AssistedImage Processing, Computer-AssistedMagnetic Resonance ImagingPattern Recognition, AutomatedBiomarkersAgingComputer-aided detectionMagnetic resonance imagingTransport-based morphometry

Identifiers

PMID29117580
PMCPMC5912801
OpenAlexW2616032077

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.