Evidence map›Paper›PMID 29117557›Full record

ArticleCell reports2017

The Role of Eif6 in Skeletal Muscle Homeostasis Revealed by Endurance Training Co-expression Networks.

Kim Clarke, Sara Ricciardi, Tim Pearson, Izwan Bharudin, Peter K Davidsen, Michela Bonomo, Daniela Brina, Alessandra Scagliola, Deborah M Simpson, Robert J Beynon and 15 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 2 pooled it
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 2 syntheses or guidelines pooled it, 28 citations in OpenAlex.

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  16. Personalized medicine for patients with COPD: where are we?International journal of chronic obstructive pulmonary disease · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 9 institutions in 5 countries.

Kim ClarkeInstitute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK.
Sara RicciardiMolecular Histology and Cell Growth Unit, INGM - Fondazione Istituto Nazionale Genetica Molecolare, 20122 Milan, Italy.
Tim PearsonDepartment of Medicine, University of East Anglia, Norwich Research Park, Norwich NR4 7TJ, UK.
Izwan BharudinInstitute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK; School of Biosciences and Biotechnology, Universiti Kebangsaan Malaysia, 43600 Bangi, Selangor, Malaysia.
Peter K DavidsenInstitute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK.
Michela BonomoInstitute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK.
Daniela BrinaMolecular Histology and Cell Growth Unit, INGM - Fondazione Istituto Nazionale Genetica Molecolare, 20122 Milan, Italy.
Alessandra ScagliolaMolecular Histology and Cell Growth Unit, INGM - Fondazione Istituto Nazionale Genetica Molecolare, 20122 Milan, Italy.
Deborah M SimpsonCentre for Proteome Research, Institute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK.
Robert J BeynonCentre for Proteome Research, Institute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK.
Farhat KhanimSchool of Biosciences, University of Birmingham, Birmingham B15 2TT, UK.
John AnkersInstitute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK.
Mark A SarzynskiPennington Biomedical Research Center, Baton Rouge, LA 70808, USA.
Sujoy GhoshPennington Biomedical Research Center, Baton Rouge, LA 70808, USA.
Addolorata PiscontiInstitute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK.
Jan RozmanGerman Mouse Clinic, Institute of Experimental Genetics, Helmholtz Zentrum München, German Research Center for Environmental Health, Ingolstädter Landstr. 1, 85764 Neuherberg, Germany.
Martin Hrabe de AngelisGerman Mouse Clinic, Institute of Experimental Genetics, Helmholtz Zentrum München, German Research Center for Environmental Health, Ingolstädter Landstr. 1, 85764 Neuherberg, Germany.
Chris BunceSchool of Biosciences, University of Birmingham, Birmingham B15 2TT, UK.
Claire StewartSport and Exercise Sciences, Liverpool John Moores University, Liverpool L3 3AF, UK.
Stuart EggintonSchool of Biomedical Sciences, University of Leeds, Leeds LS2 9JT, UK.
Mark CaddickInstitute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK.
Malcolm JacksonInstitute of Ageing and Chronic Disease, University of Liverpool, Liverpool L7 8TX, UK.
Claude BouchardPennington Biomedical Research Center, Baton Rouge, LA 70808, USA.
Stefano BiffoMolecular Histology and Cell Growth Unit, INGM - Fondazione Istituto Nazionale Genetica Molecolare, 20122 Milan, Italy; Dipartimento di Bioscienze, Università degli Studi di Milano, 20133 Milan, Italy.
Francesco FalcianiInstitute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK. Electronic address: f.falciani@liverpool.ac.uk.
University of Liverpool · GBIstituto Nazionale Genetica Molecolare · ITPennington Biomedical Research Center · USHelmholtz Zentrum München · DEUniversity of Birmingham · GBLiverpool John Moores University · GBNational University of Malaysia · MYNorwich Research Park · GBUniversity of Leeds · GB

Funding

Medical Research Council MR/M009114/1Medical Research Council MR/M012573/1Medical Research Council MR/P020941/1
6 · The paper itself

Abstract

Regular endurance training improves muscle oxidative capacity and reduces the risk of age-related disorders. Understanding the molecular networks underlying this phenomenon is crucial. Here, by exploiting the power of computational modeling, we show that endurance training induces profound changes in gene regulatory networks linking signaling and selective control of translation to energy metabolism and tissue remodeling. We discovered that knockdown of the mTOR-independent factor Eif6, which we predicted to be a key regulator of this process, affects mitochondrial respiration efficiency, ROS production, and exercise performance. Our work demonstrates the validity of a data-driven approach to understanding muscle homeostasis.

Indexed as

ExerciseAcetylationAnimalsCalorimetryChromatography, High Pressure LiquidDown-RegulationEnergy MetabolismEukaryotic Initiation FactorsGene Regulatory NetworksHumansMiceMice, Inbred C57BLMice, KnockoutMitochondriaMuscle, SkeletalOligonucleotide Array Sequence AnalysisEukaryotic Initiation FactorsOxygenProteomeReactive Oxygen SpeciesEif6exercisemetabolismmitochondrianetwork biologyskeletal musclesystems biology

Identifiers

PMID29117557
PMCPMC5695912
OpenAlexW2767706598

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.