Evidence map›Paper›PMID 29117182›Full record

ArticlePloS one2017

Structural and functional analysis of coral Hypoxia Inducible Factor.

Didier Zoccola, Jonas Morain, Gilles Pagès, Natacha Caminiti-Segonds, Sandy Giuliano, Sylvie Tambutté, Denis Allemand

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 30 citations in OpenAlex.

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  12. Photosymbiosis for Biomedical Applications.Frontiers in bioengineering and biotechnology · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Didier ZoccolaCentre Scientifique de Monaco, Department of Marine Biology, 8 Quai Antoine Ier, Principality of Monaco.ORCID http://orcid.org/0000-0002-1524-8098
Jonas MorainCentre Scientifique de Monaco, Department of Marine Biology, 8 Quai Antoine Ier, Principality of Monaco.
Gilles PagèsCentre Scientifique de Monaco, Department of Medical Biology, 8 Quai Antoine Ier, Principality of Monaco.
Natacha Caminiti-SegondsCentre Scientifique de Monaco, Department of Marine Biology, 8 Quai Antoine Ier, Principality of Monaco.
Sandy GiulianoCentre Scientifique de Monaco, Department of Medical Biology, 8 Quai Antoine Ier, Principality of Monaco.
Sylvie TambuttéCentre Scientifique de Monaco, Department of Marine Biology, 8 Quai Antoine Ier, Principality of Monaco.
Denis AllemandCentre Scientifique de Monaco, 8 Quai Antoine Ier, Principality of Monaco.
Scientific Centre of Monaco · MCCentre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tissues of symbiotic Cnidarians are exposed to wide, rapid and daily variations of oxygen concentration. Indeed, during daytime, intracellular O2 concentration increases due to symbiont photosynthesis, while during night, respiration of both host cells and symbionts leads to intra-tissue hypoxia. The Hypoxia Inducible Factor 1 (HIF-1) is a heterodimeric transcription factor used for maintenance of oxygen homeostasis and adaptation to hypoxia. Here, we carried out a mechanistic study of the response to variations of O2 concentrations of the coral model Stylophora pistillata. In silico analysis showed that homologs of HIF-1 α (SpiHIF-1α) and HIF-1β (SpiHIF-1β) exist in coral. A specific SpiHIF-1 DNA binding on mammalian Hypoxia Response Element (HRE) sequences was shown in extracts from coral exposed to dark conditions. Then, we cloned the coral HIF-1α and β genes and determined their expression and transcriptional activity. Although HIF-1α has an incomplete Oxygen-dependent Degradation Domain (ODD) relative to its human homolog, its protein level is increased under hypoxia when tested in mammalian cells. Moreover, co-transfection of SpiHIF-1α and β in mammalian cells stimulated an artificial promoter containing HRE only in hypoxic conditions. This study shows the strong conservation of molecular mechanisms involved in adaptation to O2 concentration between Cnidarians and Mammals whose ancestors diverged about 1,200-1,500 million years ago.

Indexed as

AnimalsAnthozoaAryl Hydrocarbon Receptor Nuclear TranslocatorCloning, MolecularGene Expression RegulationHypoxiaHypoxia-Inducible Factor 1, alpha SubunitOxygenPhotosynthesisPromoter Regions, GeneticResponse ElementsSymbiosisAryl Hydrocarbon Receptor Nuclear TranslocatorHypoxia-Inducible Factor 1, alpha SubunitOxygen

Identifiers

PMID29117182
PMCPMC5695583
OpenAlexW2767697681

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.