Evidence map›Paper›PMID 29116389›Full record

ArticleVirchows Archiv : an international journal of pathology2018

Development of CD3 cell quantitation algorithms for renal allograft biopsy rejection assessment utilizing open source image analysis software.

Andres Moon, Geoffrey H Smith, Jun Kong, Thomas E Rogers, Carla L Ellis, Alton B Brad Farris

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Virchows Archiv : an international journal of pathology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 1 pooled it
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 1 synthesis or guideline pooled it, 15 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Commentary: The Digital Fate of Glomeruli in Renal Biopsy.Journal of pathology informatics · 2021
    Article
  8. Banff Digital Pathology Working Group: Going digital in transplant pathology.American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons · 2020
    Article
  9. Review
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Andres MoonDepartment of Pathology, Emory University, Atlanta, GA, USA.
Geoffrey H SmithDepartment of Pathology, Emory University, Atlanta, GA, USA.
Jun KongDepartment of Bioinformatics, Emory University, Atlanta, GA, USA.
Thomas E RogersDepartment of Pathology, Emory University, Atlanta, GA, USA.
Carla L EllisDepartment of Pathology, Emory University, Atlanta, GA, USA.
Alton B Brad FarrisDepartment of Pathology, Emory University, Atlanta, GA, USA. abfarri@emory.edu.
Emory University · USEmory University Hospital · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Renal allograft rejection diagnosis depends on assessment of parameters such as interstitial inflammation; however, studies have shown interobserver variability regarding interstitial inflammation assessment. Since automated image analysis quantitation can be reproducible, we devised customized analysis methods for CD3+ T-cell staining density as a measure of rejection severity and compared them with established commercial methods along with visual assessment. Renal biopsy CD3 immunohistochemistry slides (n = 45), including renal allografts with various degrees of acute cellular rejection (ACR) were scanned for whole slide images (WSIs). Inflammation was quantitated in the WSIs using pathologist visual assessment, commercial algorithms (Aperio nuclear algorithm for CD3+ cells/mm

Indexed as

AlgorithmsImmunohistochemistryBiomarkersBiopsyCD3 ComplexGraft RejectionHumansImage Interpretation, Computer-AssistedKidneyKidney TransplantationRetrospective StudiesSeverity of Illness IndexSoftwareT-LymphocytesBiomarkersCD3 ComplexImage analysisImmunohistochemistryRejectionRenal allograftWhole slide image

Identifiers

PMID29116389
OpenAlexW2768044711

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.