ArticleNature plants2017
Transcriptome dynamics revealed by a gene expression atlas of the early Arabidopsis embryo.
Article in Nature plants, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 40 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
40 citing papers in PubMed.
- Dissecting the cellular architecture and genetic circuitry of the soybean seed.Proceedings of the National Academy of Sciences of the United States of America · 2025Article
- An AGO10:miR165/6 module regulates meristem activity and xylem development in the Arabidopsis root.The EMBO journal · 2024Article
- Review
- An elastic proteinaceous envelope encapsulates the early Arabidopsis embryo.Development (Cambridge, England) · 2023Article
- The eINTACT method for studying nuclear changes in host plant cells targeted by bacterial effectors in native infection contexts.Nature protocols · 2023Review
- Synthetic developmental biology: molecular tools to re-design plant shoots and roots.Journal of experimental botany · 2023Review
- Isolation of Nuclei Tagged in Specific Cell Types (INTACT) in Arabidopsis.Methods in molecular biology (Clifton, N.J.) · 2023Article
- Design, execution, and interpretation of plant RNA-seq analyses.Frontiers in plant science · 2023Review
- Transcriptomes across fertilization and seed development in the water lily Nymphaea thermarum (Nymphaeales): evidence for epigenetic patterning during reproduction.Plant reproduction · 2022Article
- A genetic framework for proximal secondary vein branching in the Arabidopsis thaliana embryo.Development (Cambridge, England) · 2022Article
- Stochastic gene expression drives mesophyll protoplast regeneration.Science advances · 2021Article
- The Polycomb group protein MEDEA controls cell proliferation and embryonic patterning in Arabidopsis.Developmental cell · 2021Article
- OMICs, Epigenetics, and Genome Editing Techniques for Food and Nutritional Security.Plants (Basel, Switzerland) · 2021Review
- Gene expression variation in Arabidopsis embryos at single-nucleus resolution.Development (Cambridge, England) · 2021Article
- An Essential Function for Auxin in Embryo Development.Cold Spring Harbor perspectives in biology · 2021Review
- Article
- Comparative analysis of embryo proper and suspensor transcriptomes in plant embryos with different morphologies.Proceedings of the National Academy of Sciences of the United States of America · 2021Article
- Developmental and genomic architecture of plant embryogenesis: from model plant to crops.Plant communications · 2021Review
- TheQuantitative plant biology · 2021Review
- Meiocyte Isolation by INTACT and Meiotic Transcriptome Analysis inFrontiers in plant science · 2021Article
Corrections and comments
- Erratum issued
Authors and funding
11 authors.
Funding
Abstract
During early plant embryogenesis, precursors for all major tissues and stem cells are formed. While several components of the regulatory framework are known, how cell fates are instructed by genome-wide transcriptional activity remains unanswered-in part because of difficulties in capturing transcriptome changes at cellular resolution. Here, we have adapted a two-component transgenic labelling system to purify cell-type-specific nuclear RNA and generate a transcriptome atlas of early Arabidopsis embryo development, with a focus on root stem cell niche formation. We validated the dataset through gene expression analysis, and show that gene activity shifts in a spatio-temporal manner, probably signifying transcriptional reprogramming, to induce developmental processes reflecting cell states and state transitions. This atlas provides the most comprehensive tissue- and cell-specific description of genome-wide gene activity in the early plant embryo, and serves as a valuable resource for understanding the genetic control of early plant development.
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Registered trials
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