Evidence map›Paper›PMID 29116217›Full record

ArticleEmerging microbes & infections2017

Diversity of Middle East respiratory syndrome coronaviruses in 109 dromedary camels based on full-genome sequencing, Abu Dhabi, United Arab Emirates.

Mohammed Farouk Yusof, Krista Queen, Yassir Mohammed Eltahir, Clinton R Paden, Zulaikha Mohamed Abdel Hameed Al Hammadi, Ying Tao, Yan Li, Abdelmalik Ibrahim Khalafalla, Mang Shi, Jing Zhang and 10 more

Open access · goldAbstract read
In one paragraph

Article in Emerging microbes & infections, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed, 3 pooled it
6.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 3 syntheses or guidelines pooled it, 45 citations in OpenAlex.

  1. Pooled it
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  8. MERS-CoV Found inViruses · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 5 institutions in 3 countries.

Mohammed Farouk YusofAbu Dhabi Food Control Authority, Abu Dhabi, UAE.
Krista QueenDivision of Viral Diseases, National Center for Immunizations and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA.
Yassir Mohammed EltahirAbu Dhabi Food Control Authority, Abu Dhabi, UAE.
Clinton R PadenDivision of Viral Diseases, National Center for Immunizations and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA.
Zulaikha Mohamed Abdel Hameed Al HammadiAbu Dhabi Food Control Authority, Abu Dhabi, UAE.
Ying TaoDivision of Viral Diseases, National Center for Immunizations and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA.
Yan LiDivision of Viral Diseases, National Center for Immunizations and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA.
Abdelmalik Ibrahim KhalafallaAbu Dhabi Food Control Authority, Abu Dhabi, UAE.
Mang ShiUniversity of Sydney, Sydney, NSW, Australia.
Jing ZhangDivision of Viral Diseases, National Center for Immunizations and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA.
Muzammil Sayed Ahmed Elhaj MohamedAbu Dhabi Food Control Authority, Abu Dhabi, UAE.
Mahmud Hamed Abd Elaal AhmedAbu Dhabi Food Control Authority, Abu Dhabi, UAE.
Ihsaan Abdulwahab AzeezAbu Dhabi Food Control Authority, Abu Dhabi, UAE.
Oum Keltoum BensalahAbu Dhabi Food Control Authority, Abu Dhabi, UAE.
Ziyada Swar EldahabAbu Dhabi Food Control Authority, Al Ain, UAE.
Farida Ismail Al HosaniHealth Authority of Abu Dhabi, Abu Dhabi, UAE.
Susan I GerberDivision of Viral Diseases, National Center for Immunizations and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA.
Aron J HallDivision of Viral Diseases, National Center for Immunizations and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA.
Suxiang TongDivision of Viral Diseases, National Center for Immunizations and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA.
Salama Suhail Al MuhairiAbu Dhabi Food Control Authority, Abu Dhabi, UAE.
National Center for Immunization and Respiratory Diseases · USAbu Dhabi Health Services · AECenters for Disease Control and Prevention · USOak Ridge Associated Universities · USThe University of Sydney · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Middle East respiratory syndrome coronavirus (MERS-CoV) was identified on the Arabian Peninsula in 2012 and is still causing cases and outbreaks in the Middle East. When MERS-CoV was first identified, the closest related virus was in bats; however, it has since been recognized that dromedary camels serve as a virus reservoir and potential source for human infections. A total of 376 camels were screened for MERS-Cov at a live animal market in the Eastern Region of the Emirate of Abu Dhabi, UAE. In all, 109 MERS-CoV-positive camels were detected in week 1, and a subset of positive camels were sampled again weeks 3 through 6. A total of 126 full and 3 nearly full genomes were obtained from 139 samples. Spike gene sequences were obtained from 5 of the 10 remaining samples. The camel MERS-CoV genomes from this study represent 3 known and 2 potentially new lineages within clade B. Within lineages, diversity of camel and human MERS-CoV sequences are intermixed. We identified sequences from market camels nearly identical to the previously reported 2015 German case who visited the market during his incubation period. We described 10 recombination events in the camel samples. The most frequent recombination breakpoint was the junctions between ORF1b and S. Evidence suggests MERS-CoV infection in humans results from continued introductions of distinct MERS-CoV lineages from camels. This hypothesis is supported by the camel MERS-CoV genomes sequenced in this study. Our study expands the known repertoire of camel MERS-CoVs circulating on the Arabian Peninsula.

Indexed as

Genetic VariationAnimalsCamelusCluster AnalysisFemaleGenome, ViralGenotypeMaleMiddle East Respiratory Syndrome CoronavirusPhylogenyRecombination, GeneticSequence Analysis, DNASpike Glycoprotein, CoronavirusUnited Arab EmiratesSpike Glycoprotein, Coronavirus

Identifiers

PMID29116217
PMCPMC5717090
OpenAlexW2767373046

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.