Evidence map›Paper›PMID 29116155›Full record

ArticleScientific reports2017

Using CRISPR-Cas9-mediated genome editing to generate C. difficile mutants defective in selenoproteins synthesis.

Kathleen N McAllister, Laurent Bouillaut, Jennifer N Kahn, William T Self, Joseph A Sorg

Abstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers.

0numbers the graph read from it
0cells of the map it votes in
68citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

68 citing papers in PubMed.

  1. Article
  2. A set of genetic tools for use inMicrobiology (Reading, England) · 2026
    Article
  3. Article
  4. Nanoluciferase-Based Reporters for Clostridioides difficile.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
  5. Visualizing C. difficile During Murine Infection.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Microbiology spectrum · 2024
    Article
  13. Article
  14. Article
  15. Identification of a family of peptidoglycan transpeptidases reveals thatProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  16. Article
  17. Article
  18. The impact of YabG mutations onbioRxiv : the preprint server for biology · 2024
    Article
  19. Article
  20. Identification ofJournal of bacteriology · 2024
    Article

8 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Kathleen N McAllisterDepartment of Biology, Texas A&M University, College Station, TX, USA.
Laurent BouillautDepartment of Molecular Biology & Microbiology, Tufts University School of Medicine, Boston, MA, USA.
Jennifer N KahnDepartment of Biology, Texas A&M University, College Station, TX, USA.
William T SelfBurnett School of Biomedical Sciences, University of Central Florida, Orlando, FL, USA.
Joseph A SorgDepartment of Biology, Texas A&M University, College Station, TX, USA. jsorg@bio.tamu.edu.ORCID 0000-0001-7822-2656

Funding

Decoding Antibiotic-induced Susceptibility to Clostridium difficile InfectionU01AI124290 · NIAID · BAYLOR COLLEGE OF MEDICINE · PI BRITTON, ROBERT A, GAREY, KEVIN W · 2016 to 2020
$7.9M
ISOLATION OF EARLY SPORULATION GENESR01GM042219 · NIGMS · TUFTS UNIVERSITY BOSTON · PI SONENSHEIN, ABRAHAM LINCOLN · 1989 to 2015
$5.8M
Mechanisms of Clostridium difficile spore germinationR01AI116895 · NIAID · TEXAS A&M UNIVERSITY · PI SORG, JOE · 2015 to 2024
$3.9M
NIAID NIH HHS R01 AI116895NIAID NIH HHS U01 AI124290NIGMS NIH HHS R01 GM042219
6 · The paper itself

Abstract

Clostridium difficile is a significant concern as a nosocomial pathogen, and genetic tools are important when analyzing the physiology of such organisms so that the underlying physiology/pathogenesis of the organisms can be studied. Here, we used TargeTron to investigate the role of selenoproteins in C. difficile Stickland metabolism and found that a TargeTron insertion into selD, encoding the selenophosphate synthetase that is essential for the specific incorporation of selenium into selenoproteins, results in a significant growth defect and a global loss of selenium incorporation. However, because of potential polar effects of the TargeTron insertion, we developed a CRISPR-Cas9 mutagenesis system for C. difficile. This system rapidly and efficiently introduces site-specific mutations into the C. difficile genome (20-50% mutation frequency). The selD CRISPR deletion mutant had a growth defect in protein-rich medium and mimicked the phenotype of a generated TargeTron selD mutation. Our findings suggest that Stickland metabolism could be a target for future antibiotic therapies and that the CRISPR-Cas9 system can introduce rapid and efficient modifications into the C. difficile genome.

Indexed as

Clostridioides difficileCRISPR-Associated Protein 9CRISPR-Cas SystemsElectrophoresis, Polyacrylamide GelGene EditingGenes, BacterialPhosphotransferasesSeleniumSelenoproteinsCRISPR-Associated Protein 9PhosphotransferasesSeleniumselenophosphate synthetaseSelenoproteins

Identifiers

PMID29116155
PMCPMC5677094

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.