Evidence map›Paper›PMID 29116056›Full record

ArticlePhysical biology2018

Excess area dependent scaling behavior of nano-sized membrane tethers.

N Ramakrishnan, K K Sreeja, Arpita Roychoudhury, David M Eckmann, Portonovo S Ayyaswamy, Tobias Baumgart, Thomas Pucadyil, Shivprasad Patil, Valerie M Weaver, Ravi Radhakrishnan

Abstract read
In one paragraph

Article in Physical biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Modeling membrane reshaping driven by dynamic protein assemblies.Current opinion in structural biology · 2023
    Review
  4. Article
  5. Article
  6. Article
  7. Membrane signalosome: where biophysics meets systems biology.Current opinion in systems biology · 2021
    Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Biophysics of membrane curvature remodeling at molecular and mesoscopic lengthscales.Journal of physics. Condensed matter : an Institute of Physics journal · 2018
    Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

N RamakrishnanDepartment of Bioengineering, University of Pennsylvania, Philadelphia, PA, 19104, United States of America.ORCID 0000-0002-7888-9255
K K SreejaDepartment of Chemical and Biomolecular engineering, University of Pennsylvania, Philadelphia, PA, 19104, United States of America.
Arpita RoychoudhuryDepartment of Physics, Indian Institute of Science Education and Research, Pune, 411008, India.
David M EckmannDepartment of Bioengineering, University of Pennsylvania, Philadelphia, PA, 19104, United States of America.ORCID 0000-0002-8954-8827
Portonovo S AyyaswamyDepartment of Mechanical engineering and Applied Mechanics, University of Pennsylvania, Philadelphia, PA, 19104, United States of America.
Tobias BaumgartDepartment of Chemistry, University of Pennsylvania, Philadelphia, PA, 19104, United States of America.
Thomas PucadyilDepartment of Biology, Indian Institute of Science Education and Research, Pune, 411008, India.
Shivprasad PatilDepartment of Physics, Indian Institute of Science Education and Research, Pune, 411008, India.
Valerie M WeaverDepartment of Surgery and Anatomy, University of California San Francisco, San Francisco, CA, 94143, United States of America.
Ravi RadhakrishnanDepartment of Bioengineering, University of Pennsylvania, Philadelphia, PA, 19104, United States of America.ORCID 0000-0003-0686-2851

Funding

PSOC@Penn Education and OutreachU54CA193417 · NCI · UNIVERSITY OF PENNSYLVANIA · PI DISCHER, DENNIS E. · 2015 to 2020
$10.5M
Project 3: Physical and Metabolic Constraints of Cancer Cell InvasionU54CA210184 · NCI · CORNELL UNIVERSITY · PI CANTLEY, LEWIS C., FISCHBACH, CLAUDIA · 2016 to 2020
$10.2M
Membrane shape transition control in cellular membrane trafficking phenomenaR01GM097552 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI BAUMGART, TOBIAS · 2011 to 2023
$4.5M
ECM geometrical and mechanical properties modulate RTK signalingU01CA202241 · NCI · UNIVERSITY OF CALIFORNIA BERKELEY · PI GROVES, JAY T., WEAVER, VALERIE MARIE · 2015 to 2019
$3.3M
Tension-Stat3-miR-mediated metastasisR01CA192914 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SEEWALDT, VICTORIA L., WEAVER, VALERIE MARIE · 2015 to 2019
$2.9M
Bridging multiple scales in modeling targeted drug nanocarrier deliveryU01EB016027 · NIBIB · UNIVERSITY OF PENNSYLVANIA · PI ECKMANN, DAVID M, RADHAKRISHNAN, RAVI · 2013 to 2017
$2.7M
NCI NIH HHS R01 CA192914NCI NIH HHS U01 CA202241NCI NIH HHS U54 CA193417NCI NIH HHS U54 CA210184NIBIB NIH HHS U01 EB016027NIGMS NIH HHS R01 GM097552Wellcome Trust-DBT India Alliance
6 · The paper itself

Abstract

Thermal fluctuations in cell membranes manifest as an excess area ([Formula: see text]) which governs a multitude of physical process at the sub-micron scale. We present a theoretical framework, based on an in silico tether pulling method, which may be used to reliably estimate [Formula: see text] in live cells. We perform our simulations in two different thermodynamic ensembles: (i) the constant projected area and (ii) the constant frame tension ensembles and show the equivalence of our results in the two. The tether forces estimated from our simulations compare well with our experimental measurements for tethers extracted from ruptured GUVs and HeLa cells. We demonstrate the significance and validity of our method by showing that all our calculations performed in the initial tether formation regime (i.e. when the length of the tether is comparable to its radius) along with experiments of tether extraction in 15 different cell types collapse onto two unified scaling relationships mapping tether force, tether radius, bending stiffness κ, and membrane tension σ. We show that [Formula: see text] is an important determinant of the radius of the extracted tether, which is equal to the characteristic length [Formula: see text] for [Formula: see text], and is equal to [Formula: see text] for [Formula: see text]. We also find that the estimated excess area follows a linear scaling behavior that only depends on the true value of [Formula: see text] for the membrane, based on which we propose a self-consistent technique to estimate the range of excess membrane areas in a cell.

Indexed as

Cell MembraneComputer SimulationModels, BiologicalThermodynamics

Identifiers

PMID29116056
PMCPMC5832653

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.