Evidence map›Paper›PMID 29115933›Full record

ArticleBMC infectious diseases2017

New variant identified in major susceptibility locus to tuberculosis on chromosomal region 8q12-q13 in Moroccan population: a case control study.

Mounia Qrafli, Imane Asekkaj, Jamal Eddine Bourkadi, Rajae El Aouad, Khalid Sadki

Open access · goldAbstract read
In one paragraph

Article in BMC infectious diseases, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Mounia QrafliPhysiopathology Team, Immunogenetics and Bioinformatics Unit, Genomic Center of Human Pathologies, Faculty of Sciences, Mohammed V University, Rabat, Morocco.
Imane AsekkajPhysiopathology Team, Immunogenetics and Bioinformatics Unit, Genomic Center of Human Pathologies, Faculty of Sciences, Mohammed V University, Rabat, Morocco.
Jamal Eddine BourkadiPneumo-Phtisiology Department, Moulay Youssef Hospital, CHU of Rabat, Rabat, Morocco.
Rajae El AouadAcadémie Hassan II des Sciences et Techniques, Rabat, Morocco.
Khalid SadkiPhysiopathology Team, Immunogenetics and Bioinformatics Unit, Genomic Center of Human Pathologies, Faculty of Sciences, Mohammed V University, Rabat, Morocco. ksadki1@yahoo.fr.ORCID 0000-0002-9224-5050
Mohammed V University · MAHassan II Academy of Science and Technology · MAHôpital El Ayachi · MA

Funding

H3ABioNet: a sustainable African Bioinformatics Network for H3AfricaU41HG006941 · NHGRI · UNIVERSITY OF CAPE TOWN · PI MULDER, NICOLA · 2012 to 2017
$14.8M
H3ABioNet: informatics solutions for H3AfricaU24HG006941 · NHGRI · UNIVERSITY OF CAPE TOWN · PI MULDER, NICOLA · 2017 to 2021
$12.9M
NHGRI NIH HHS U24 HG006941NHGRI NIH HHS U41 HG006941
6 · The paper itself

Abstract

backgroundTuberculosis (TB) remains a global health problem. Several studies have implicated genetic host factors in predisposing populations to TB disease. In this study, we have selected NSMAF (Neutral Sphingomyelinase Activation Associated Factor) as a candidate gene to evaluate its level of association with TB disease in a Moroccan population for two reasons: first, this gene is located in a major susceptibility locus on chromosomal region 8q12-q13 in the Moroccan population, closely linked to the CYP7A1 gene, which was previously shown to be associated with TB disease; second, NSMAF has an important role in immune system function.

methodsWe conducted a case-control study including 269 genomic DNA samples extracted from pulmonary TB (PTB) patients and healthy controls (HC). We genotyped three selected SNPs (rs2228505, rs36067275 and rs10505004) using TaqMan® allelic discrimination assays.

resultsOnly the rs1050504 C > T genotype was observed to be significantly associated with an increased risk for developing pulmonary TB (41.8% vs 27%, OR 1.95, 95% CI 1.16-3.27; p = 0.01). In contrast, the TT genotype was significantly associated with resistance to PTB (4.1% vs 15.6%, OR 0.23, 95% CI 0.08-0.63; p = 0.002).

conclusionOur findings suggest that genetic variations in the NSMAF gene could modulate the risk of PTB development in a Moroccan population. Further functional studies are needed to confirm these findings.

Indexed as

Chromosomes, Human, Pair 8Genetic Predisposition to DiseaseAdultAllelesBlack PeopleCase-Control StudiesFemaleGenetic VariationGenotypeHumansIntracellular Signaling Peptides and ProteinsMaleMiddle AgedMoroccoPolymorphism, Single NucleotideTuberculosis, PulmonaryIntracellular Signaling Peptides and ProteinsNSMAF protein, humanApoptosisMoroccanNSMAFTuberculosis

Identifiers

PMID29115933
PMCPMC5674759
OpenAlexW2767243990

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.