Evidence map›Paper›PMID 29114403›Full record

ArticleMicrobial genomics2017

Transcriptomic analysis of aerobic respiratory and anaerobic photosynthetic states in

Joseph E Kumka, Heidi Schindel, Mingxu Fang, Sebastien Zappa, Carl E Bauer

Open access · goldAbstract read
In one paragraph

Article in Microbial genomics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Metagenome-assembled genome ofMicrobiology resource announcements · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Joseph E Kumka1Molecular and Cellular Biochemistry, Indiana University, Bloomington, USA.
Heidi Schindel1Molecular and Cellular Biochemistry, Indiana University, Bloomington, USA.
Mingxu Fang1Molecular and Cellular Biochemistry, Indiana University, Bloomington, USA.
Sebastien Zappa1Molecular and Cellular Biochemistry, Indiana University, Bloomington, USA.
Carl E Bauer2Biochemistry, Indiana University Bloomington, Simon Hall MSB, 212 S Hawthorne Dr, Bloomington, IN 47405-7003, USA.
Indiana University Bloomington · US

Funding

Prokaryotic gene regulation by light and oxygenR37GM040941 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI BAUER, CARL EUGENE · 2006 to 2016
$5.4M
PROKARYOTIC GENE REGULATION BY LIGHT AND OXYGENR01GM040941 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI BAUER, CARL EUGENE · 1994 to 2020
$3.3M
NIGMS NIH HHS R01 GM040941NIGMS NIH HHS R37 GM040941
6 · The paper itself

Abstract

Anoxygenicphotosynthetic prokaryotes have simplified photosystems that represent ancient lineages that predate the more complex oxygen evolving photosystems present in cyanobacteria and chloroplasts. These organisms thrive under illuminated anaerobic photosynthetic conditions, but also have the ability to grow under dark aerobic respiratory conditions. This study provides a detailed snapshot of transcription ground states of both dark aerobic and anaerobic photosynthetic growth modes in the purple photosynthetic bacterium

Indexed as

Gene Expression Regulation, BacterialAnaerobiosisBacterial ProteinsBacteriochlorophyllsCarbon CycleCarotenoidsDNA, BacterialDNA-Binding ProteinsGene Expression ProfilingGlycolysisHomeostasisOxidation-ReductionPhotosynthesisPhotosynthetic Reaction Center Complex ProteinsRhodobacter capsulatusTranscription FactorsBacterial ProteinsBacteriochlorophyllsCarotenoidsCrtJ protein, RhodobacterDNA, BacterialDNA-Binding ProteinsPhotosynthetic Reaction Center Complex ProteinsRegA protein, BacteriaTranscription FactorsVitamin B 12CrtJFnrLredox regulationRegAtranscriptomics

Identifiers

PMID29114403
PMCPMC5643017
OpenAlexW2734992917

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.