Evidence map›Paper›PMID 29113849›Full record

ArticleJournal of structural biology2018

Marker-free method for accurate alignment between correlated light, cryo-light, and electron cryo-microscopy data using sample support features.

Karen L Anderson, Christopher Page, Mark F Swift, Dorit Hanein, Niels Volkmann

Abstract read
In one paragraph

Article in Journal of structural biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Recent advances in correlative cryo-light and electron microscopy.Current opinion in structural biology · 2024
    Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. [Progress in filters for denoising cryo-electron microscopy images].Beijing da xue xue bao. Yi xue ban = Journal of Peking University. Health sciences · 2021
    Article
  7. Cryogenic single-molecule fluorescence annotations for electron tomography reveal in situ organization of key proteins inProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  8. Article
  9. High Rac1 activity is functionally translated into cytosolic structures with unique nanoscale cytoskeletal architecture.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  10. Article
  11. Biological Applications at the Cutting Edge of Cryo-Electron Microscopy.Microscopy and microanalysis : the official journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Karen L AndersonSanford-Burnham-Prebys Medical Discovery Institute, Bioinformatics and Structural Biology Program, La Jolla, CA, USA.
Christopher PageSanford-Burnham-Prebys Medical Discovery Institute, Bioinformatics and Structural Biology Program, La Jolla, CA, USA.
Mark F SwiftSanford-Burnham-Prebys Medical Discovery Institute, Bioinformatics and Structural Biology Program, La Jolla, CA, USA.
Dorit HaneinSanford-Burnham-Prebys Medical Discovery Institute, Bioinformatics and Structural Biology Program, La Jolla, CA, USA.
Niels VolkmannSanford-Burnham-Prebys Medical Discovery Institute, Bioinformatics and Structural Biology Program, La Jolla, CA, USA. Electronic address: niels@burnham.org.

Funding

Tumor Microenvironment and Cancer ImmunologyP30CA030199 · NCI · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI Michael Jackson · 1985 to 2026
$107.2M
Ultrastructural Basis of Mechanotransduction in Matrix AdhesionsP01GM098412 · NIGMS · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI GROISMAN, ALEX · 2011 to 2015
$8.0M
Structural basis of allostery and mechanical properties of F-actinR01GM115972 · NIGMS · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI ALMO, STEVEN C., HANEIN, DORIT · 2016 to 2019
$2.3M
Tools for Quantitative Analysis of Complex Systems in CryoETP01GM121203 · NIGMS · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI VOLKMANN, NIELS · 2018 to 2019
$1.9M
Instrumentation Upgrade: acquisition of an intermediate voltage TEMS10OD012372 · OD · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI HANEIN, DORIT · 2012 to 2012
$1.9M
NCI NIH HHS P30 CA030199NIGMS NIH HHS P01 GM098412NIGMS NIH HHS P01 GM121203NIGMS NIH HHS R01 GM115972NIH HHS S10 OD012372
6 · The paper itself

Abstract

Combining fluorescence microscopy with electron cryo-tomography allows, in principle, spatial localization of tagged macromolecular assemblies and structural features within the cellular environment. To allow precise localization and scale integration between the two disparate imaging modalities, accurate alignment procedures are needed. Here, we describe a marker-free method for aligning images from light or cryo-light fluorescence microscopy and from electron cryo-microscopy that takes advantage of sample support features, namely the holes in the carbon film. We find that the accuracy of this method, as judged by prediction errors of the hole center coordinates, is better than 100 nm.

Indexed as

AnimalsCarbonCHO CellsCricetinaeCricetulusCryoelectron MicroscopyElectron Microscope TomographyEmbryo, MammalianFibroblastsGreen Fluorescent ProteinsMacromolecular SubstancesMiceMicroscopy, FluorescencePaxillinReproducibility of ResultsStreptococcus pneumoniaeCarbonGreen Fluorescent ProteinsMacromolecular SubstancesPaxillinAlgorithmAlignmentCellular tomographycLEMCryo-EM

Identifiers

PMID29113849
PMCPMC5748349

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.