Evidence map›Paper›PMID 29112956›Full record

Observational studyPLoS medicine2017

HIV-1 persistence following extremely early initiation of antiretroviral therapy (ART) during acute HIV-1 infection: An observational study.

Timothy J Henrich, Hiroyu Hatano, Oliver Bacon, Louise E Hogan, Rachel Rutishauser, Alison Hill, Mary F Kearney, Elizabeth M Anderson, Susan P Buchbinder, Stephanie E Cohen and 22 more

Open access · goldAbstract readCase ReportsObservational Study
In one paragraph

Observational study in PLoS medicine, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 160 papers.

0numbers the graph read from it
0cells of the map it votes in
160citing papers in PubMed
15.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

160 citing papers in PubMed, 218 citations in OpenAlex.

  1. Trial
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  8. Article
  9. Review
  10. Early immune responses anticipate HIV rebound and precede viral control.bioRxiv : the preprint server for biology · 2026
    Article
  11. Article
  12. Persistent CD8Frontiers in immunology · 2026
    Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. HIV-1 latency: From acquaintance to confidant.Journal of virus eradication · 2025
    Review
  19. Article
  20. Article

100 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

32 authors at 11 institutions in 2 countries.

Timothy J HenrichDivision of Experimental Medicine, University of California, San Francisco, California, United States of America.ORCID http://orcid.org/0000-0002-6684-0622
Hiroyu HatanoDivision of HIV, Infectious Diseases and Global Medicine, University of California, San Francisco, California, United States of America.
Oliver BaconDivision of HIV, Infectious Diseases and Global Medicine, University of California, San Francisco, California, United States of America.
Louise E HoganDivision of Experimental Medicine, University of California, San Francisco, California, United States of America.ORCID http://orcid.org/0000-0001-5526-954X
Rachel RutishauserDivision of Experimental Medicine, University of California, San Francisco, California, United States of America.
Alison HillProgram for Evolutionary Dynamics, Harvard University, Cambridge, Massachusetts, United States of America.ORCID http://orcid.org/0000-0002-6583-3623
Mary F KearneyHIV Dynamics and Replication Program, Center for Cancer Research, National Cancer Institute, Frederick, Maryland, United States of America.
Elizabeth M AndersonHIV Dynamics and Replication Program, Center for Cancer Research, National Cancer Institute, Frederick, Maryland, United States of America.
Susan P BuchbinderDivision of HIV, Infectious Diseases and Global Medicine, University of California, San Francisco, California, United States of America.ORCID http://orcid.org/0000-0003-2404-0712
Stephanie E CohenDivision of HIV, Infectious Diseases and Global Medicine, University of California, San Francisco, California, United States of America.
Mohamed Abdel-MohsenDivision of HIV, Infectious Diseases and Global Medicine, University of California, San Francisco, California, United States of America.
Christopher W PohlmeyerCenter for AIDS Research, Department of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, United States of America.
Remi FromentinCentre de Recherche du CHUM and Department of Microbiology, Infectiology and Immunology, Université de Montréal, Montreal, Quebec, Canada.ORCID http://orcid.org/0000-0002-8153-1799
Rebecca HohDivision of HIV, Infectious Diseases and Global Medicine, University of California, San Francisco, California, United States of America.
Albert Y LiuDivision of HIV, Infectious Diseases and Global Medicine, University of California, San Francisco, California, United States of America.ORCID http://orcid.org/0000-0003-0320-823X
Joseph M McCuneDivision of Experimental Medicine, University of California, San Francisco, California, United States of America.
Jonathan SpindlerHIV Dynamics and Replication Program, Center for Cancer Research, National Cancer Institute, Frederick, Maryland, United States of America.
Kelly Metcalf-PateCenter for AIDS Research, Department of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, United States of America.ORCID http://orcid.org/0000-0003-4799-4631
Kristen S HobbsDivision of Experimental Medicine, University of California, San Francisco, California, United States of America.ORCID http://orcid.org/0000-0001-8912-7398
Cassandra ThanhDivision of Experimental Medicine, University of California, San Francisco, California, United States of America.
Erica A GibsonDivision of Experimental Medicine, University of California, San Francisco, California, United States of America.
Daniel R KuritzkesDivision of Infectious Diseases, Brigham and Women's Hospital, Boston, Massachusetts, United States of America.
Robert F SilicianoDivision of Infectious Diseases, Johns Hopkins University School of Medicine, Baltimore, Maryland, United States of America.
Richard W PriceDepartment of Neurology, University of California, San Francisco, California, United States of America.
Douglas D RichmanUniversity of California San Diego, La Jolla, California, United States of America.ORCID http://orcid.org/0000-0003-0962-9254
Nicolas ChomontCentre de Recherche du CHUM and Department of Microbiology, Infectiology and Immunology, Université de Montréal, Montreal, Quebec, Canada.ORCID http://orcid.org/0000-0001-9747-5018
Janet D SilicianoHarvard Medical School, Boston, Massachusetts, United States of America.ORCID http://orcid.org/0000-0001-6712-3775
John W MellorsDepartment of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America.ORCID http://orcid.org/0000-0002-3737-9742
Steven A YuklSan Francisco Veterans Affairs Medical Center, San Francisco, California, United States of America.ORCID http://orcid.org/0000-0002-4578-9872
Joel N BlanksonCenter for AIDS Research, Department of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, United States of America.ORCID http://orcid.org/0000-0002-9683-8021
Teri LieglerDivision of HIV, Infectious Diseases and Global Medicine, University of California, San Francisco, California, United States of America.
Steven G DeeksDivision of HIV, Infectious Diseases and Global Medicine, University of California, San Francisco, California, United States of America.ORCID http://orcid.org/0000-0001-6371-747X
University of California, San Francisco · USJohns Hopkins University · USNational Cancer Institute · USCentre Hospitalier de l’Université de Montréal · CAHarvard University · USBrigham and Women's Hospital · USHoward Hughes Medical Institute · USSan Francisco VA Medical Center · USThe Wistar Institute · USUniversity of California San Diego · USUniversity of Pittsburgh · US

Funding

Virology CoreP30AI027763 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI STEVEN Grant DEEKS · 1988 to 2026
$93.6M
VirologyP30AI036214 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Maile Ann Young Karris · 1994 to 2026
$78.4M
Vaccine Response and Immunotherapeutics SWGP30AI094189 · NIAID · JOHNS HOPKINS UNIVERSITY · PI Richard E. Chaisson · 2012 to 2026
$67.0M
Using NK Cells to eliminate the latent HIV reservoirU19AI096113 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI LUCIW, PAUL · 2011 to 2015
$39.5M
Viral reservoirs and sanctuaries in HAART - treated patients: role and mechanismsU19AI096109 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SEKALY, RAFICK PIERRE · 2011 to 2015
$29.5M
First-in-human study of two anti-SARS CoV-2 antibodies in health volunteersUM1AI126620 · NIAID · WISTAR INSTITUTE · PI MONTANER, LUIS J, RILEY, JAMES L. · 2016 to 2021
$24.5M
Collaboratory of AIDS Researchers for Eradication (CARE)UM1AI126619 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI MARGOLIS, DAVID M. · 2016 to 2020
$23.2M
Quantify the Fraction of Proviruses That Express HIV RNA to Better Understand Proviral Latency and Its ReversalZIABC011698 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI KEARNEY, MARY · 2016 to 2025
$5.1M
Compartmentalized CSF viral escape and the CNS HIV reservoirR01NS094067 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI PRICE, RICHARD W. · 2015 to 2020
$3.9M
Investigating Mechanisms of HIV Persistence in the GutR01DK108349 · NIDDK · NORTHERN CALIFORNIA INSTITUTE/RES/EDU · PI YUKL, STEVEN A · 2015 to 2019
$2.2M
Understanding HIV latency reversal and clearance of infected cells in vivoR01AI132128 · NIAID · NORTHERN CALIFORNIA INSTITUTE/RES/EDU · PI WONG, JOSEPH K, YUKL, STEVEN A · 2017 to 2021
$1.9M
Single Cell Characterization of Latent HIV-1 ReservoirsR01AI122862 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI DEMIRCI, UTKAN, HENRICH, TIMOTHY JENSEN · 2016 to 2019
$1.5M
CSRD VA IK2 CX000520NIAID NIH HHS K23 AI098480NIAID NIH HHS P30 AI027763NIAID NIH HHS P30 AI036214NIAID NIH HHS P30 AI094189NIAID NIH HHS R01 AI120024NIAID NIH HHS R01 AI122862NIAID NIH HHS R01 AI132128NIAID NIH HHS R21 AI116205NIAID NIH HHS R33 AI116205NIAID NIH HHS U19 AI096109NIAID NIH HHS U19 AI096113NIAID NIH HHS UM1 AI126619NIAID NIH HHS UM1 AI126620NIDDK NIH HHS R01 DK108349NIH HHS K01 OD018244NINDS NIH HHS R01 NS094067
6 · The paper itself

Abstract

backgroundIt is unknown if extremely early initiation of antiretroviral therapy (ART) may lead to long-term ART-free HIV remission or cure. As a result, we studied 2 individuals recruited from a pre-exposure prophylaxis (PrEP) program who started prophylactic ART an estimated 10 days (Participant A; 54-year-old male) and 12 days (Participant B; 31-year-old male) after infection with peak plasma HIV RNA of 220 copies/mL and 3,343 copies/mL, respectively. Extensive testing of blood and tissue for HIV persistence was performed, and PrEP Participant A underwent analytical treatment interruption (ATI) following 32 weeks of continuous ART. METHODS AND

findingsColorectal and lymph node tissues, bone marrow, cerebral spinal fluid (CSF), plasma, and very large numbers of peripheral blood mononuclear cells (PBMCs) were obtained longitudinally from both participants and were studied for HIV persistence in several laboratories using molecular and culture-based detection methods, including a murine viral outgrowth assay (mVOA). Both participants initiated PrEP with tenofovir/emtricitabine during very early Fiebig stage I (detectable plasma HIV-1 RNA, antibody negative) followed by 4-drug ART intensification. Following peak viral loads, both participants experienced full suppression of HIV-1 plasma viremia. Over the following 2 years, no further HIV could be detected in blood or tissue from PrEP Participant A despite extensive sampling from ileum, rectum, lymph nodes, bone marrow, CSF, circulating CD4+ T cell subsets, and plasma. No HIV was detected from tissues obtained from PrEP Participant B, but low-level HIV RNA or DNA was intermittently detected from various CD4+ T cell subsets. Over 500 million CD4+ T cells were assayed from both participants in a humanized mouse outgrowth assay. Three of 8 mice infused with CD4+ T cells from PrEP Participant B developed viremia (50 million input cells/surviving mouse), but only 1 of 10 mice infused with CD4+ T cells from PrEP Participant A (53 million input cells/mouse) experienced very low level viremia (201 copies/mL); sequence confirmation was unsuccessful. PrEP Participant A stopped ART and remained aviremic for 7.4 months, rebounding with HIV RNA of 36 copies/mL that rose to 59,805 copies/mL 6 days later. ART was restarted promptly. Rebound plasma HIV sequences were identical to those obtained during acute infection by single-genome sequencing. Mathematical modeling predicted that the latent reservoir size was approximately 200 cells prior to ATI and that only around 1% of individuals with a similar HIV burden may achieve lifelong ART-free remission. Furthermore, we observed that lymphocytes expressing the tumor marker CD30 increased in frequency weeks to months prior to detectable HIV-1 RNA in plasma. This study was limited by the small sample size, which was a result of the rarity of individuals presenting during hyperacute infection.

conclusionsWe report HIV relapse despite initiation of ART at one of the earliest stages of acute HIV infection possible. Near complete or complete loss of detectable HIV in blood and tissues did not lead to indefinite ART-free HIV remission. However, the small numbers of latently infected cells in individuals treated during hyperacute infection may be associated with prolonged ART-free remission.

Indexed as

HIV-1AdultAnti-Retroviral AgentsBiomarkersFlow CytometryHIV InfectionsHumansMaleMiddle AgedPhenotypeProspective StudiesRecurrenceSecondary PreventionTreatment OutcomeAnti-Retroviral AgentsBiomarkers

Identifiers

PMID29112956
PMCPMC5675377
OpenAlexW2767453022

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.