ArticleApplications in plant sciences2017
The unexpected depths of genome-skimming data: A case study examining Goodeniaceae floral symmetry genes.
Article in Applications in plant sciences, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.
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Who cites it
14 citing papers in PubMed.
- Non-radiate flowers are associated with truncation of the CYCLOIDEA gene in Scaevola aemula (Goodeniaceae).Scientific reports · 2025Article
- Genomic DNA barcodes provide novel insights into species delimitation in the complex Camellia sect. Thea (Theaceae).BMC plant biology · 2025Article
- Deep genome skimming reveals the hybrid origin ofPlant diversity · 2024Article
- Phylogenomics and topological conflicts in the tribe Anthospermeae (Rubiaceae).Ecology and evolution · 2024Article
- Genome skimming-based STMS marker discovery and its validation in temperate hill bambooJournal of genetics · 2021Article
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- The Treasure Vault Can be Opened: Large-Scale Genome Skimming Works Well Using Herbarium and Silica Gel Dried Material.Plants (Basel, Switzerland) · 2020Article
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- Practical considerations for plant phylogenomics.Applications in plant sciences · 2018Review
- Flower heads in Asteraceae-recruitment of conserved developmental regulators to control the flower-like inflorescence architecture.Horticulture research · 2018Article
- The unexpected depths of genome-skimming data: A case study examining Goodeniaceae floral symmetry genes.Applications in plant sciences · 2017Article
- Target capture and genome skimming for plant diversity studies.Applications in plant sciencesArticle
Corrections and comments
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Authors and funding
8 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
premise of the studyThe use of genome skimming allows systematists to quickly generate large data sets, particularly of sequences in high abundance (e.g., plastomes); however, researchers may be overlooking data in low abundance that could be used for phylogenetic or evo-devo studies. Here, we present a bioinformatics approach that explores the low-abundance portion of genome-skimming next-generation sequencing libraries in the fan-flowered Goodeniaceae.
methodsTwenty-four previously constructed Goodeniaceae genome-skimming Illumina libraries were examined for their utility in mining low-copy nuclear genes involved in floral symmetry, specifically the
resultsOverall Trinity, SOAPdenovo-Trans, and SOAPdenovo implementing lower DISCUSSION: Genome-skimming data sets can provide a significant source of low-copy nuclear gene sequence data that may be used for multiple downstream applications.
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