Evidence map›Paper›PMID 29109463›Full record

ArticleScientific reports2017

A role for small secreted proteins (SSPs) in a saprophytic fungal lifestyle: Ligninolytic enzyme regulation in Pleurotus ostreatus.

Daria Feldman, David J Kowbel, N Louise Glass, Oded Yarden, Yitzhak Hadar

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
11.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Altered Expression of Two Small Secreted Proteins (International journal of molecular sciences · 2023
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Transcriptomic atlas of mushroom development reveals conserved genes behind complex multicellularity in fungi.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  14. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Daria FeldmanThe R.H. Smith Faculty Agriculture, Food and Environment, The Hebrew University of Jerusalem, Department of Plant Pathology and Microbiology, Rehovot, 76100, Israel.
David J KowbelUniversity of California at Berkeley UC Berkeley, Department of Plant and Microbial Biology, 111 Koshland Hall, Berkeley, California, 94720, USA.
N Louise GlassUniversity of California at Berkeley UC Berkeley, Department of Plant and Microbial Biology, 111 Koshland Hall, Berkeley, California, 94720, USA.
Oded YardenThe R.H. Smith Faculty Agriculture, Food and Environment, The Hebrew University of Jerusalem, Department of Plant Pathology and Microbiology, Rehovot, 76100, Israel.
Yitzhak HadarThe R.H. Smith Faculty Agriculture, Food and Environment, The Hebrew University of Jerusalem, Department of Plant Pathology and Microbiology, Rehovot, 76100, Israel. yitzhak.hadar@mail.huji.ac.il.
Hebrew University of Jerusalem · ILUniversity of California, Berkeley · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Small secreted proteins (SSPs), along with lignocellulose degrading enzymes, are integral components of the secretome of Pleurotus ostreatus, a white rot fungus. In this study, we identified 3 genes (ssp1, 2 and 3) encoding proteins that are annotated as SSPs and that exhibited of ~4,500- fold expression, 24 hr following exposure to the toxic compound 5-hydroxymethylfurfural (HMF). Homologues to genes encoding these SSPs are present in the genomes of other basidiomycete fungi, however the role of SSPs is not yet understood. SSPs, aryl-alcohol oxidases (AAO) and the intracellular aryl-alcohol dehydrogenases (AAD) were also produced after exposure to other aryl-alcohols, known substrates and inducers of AAOs, and during idiophase (after the onset of secondary metabolism). A knockdown strain of ssp1 exhibited reduced production of AAO-and AAD-encoding genes after HMF exposure. Conversely, a strain overexpressing ssp1 exhibited elevated expression of genes encoding AAOs and ADD, resulting in a 3-fold increase in enzymatic activity of AAOs, as well as increased expression and protein abundance of versatile peroxidase 1, which directly degrades lignin. We propose that in addition to symbionts and pathogens, SSPs also have roles in saprophytes and function in P. ostreatus as components of the ligninolytic system.

Indexed as

Alcohol OxidoreductasesCelluloseFood ChainFungal ProteinsGenes, FungalLigninPleurotusAlcohol Oxidoreductasesaryl-alcohol dehydrogenasearyl-alcohol oxidaseCelluloseFungal ProteinsLignin

Identifiers

PMID29109463
PMCPMC5674062
OpenAlexW2765157610

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.