Evidence map›Paper›PMID 29109430›Full record

ArticleScientific reports2017

The first draft reference genome of the American mink (Neovison vison).

Zexi Cai, Bent Petersen, Goutam Sahana, Lone B Madsen, Knud Larsen, Bo Thomsen, Christian Bendixen, Mogens Sandø Lund, Bernt Guldbrandtsen, Frank Panitz

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 20 citations in OpenAlex.

  1. Polymorphism of theGenes · 2025
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  6. The Genetic Diversity of Mink (Animals : an open access journal from MDPI · 2023
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  14. Evaluation of Growth Curve Models for Body Weight in American Mink.Animals : an open access journal from MDPI · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Zexi CaiCenter for Quantitative Genetics and Genomics, Department of Molecular Biology and Genetics, Aarhus University, DK-8830, Tjele, Denmark. zexi.cai@mbg.au.dk.
Bent PetersenDTU Bioinformatics, Department of Bio and Health Informatics, Technical University of Denmark, 2800 Kgs, Lyngby, Denmark.ORCID 0000-0002-2472-8317
Goutam SahanaCenter for Quantitative Genetics and Genomics, Department of Molecular Biology and Genetics, Aarhus University, DK-8830, Tjele, Denmark.ORCID 0000-0001-7608-7577
Lone B MadsenSection for Molecular Genetics and Systems Biology, Department of Molecular Biology and Genetics, Aarhus University, DK-8830, Tjele, Denmark.
Knud LarsenSection for Molecular Genetics and Systems Biology, Department of Molecular Biology and Genetics, Aarhus University, DK-8830, Tjele, Denmark.
Bo ThomsenSection for Molecular Genetics and Systems Biology, Department of Molecular Biology and Genetics, Aarhus University, DK-8830, Tjele, Denmark.
Christian BendixenSection for Molecular Genetics and Systems Biology, Department of Molecular Biology and Genetics, Aarhus University, DK-8830, Tjele, Denmark.
Mogens Sandø LundCenter for Quantitative Genetics and Genomics, Department of Molecular Biology and Genetics, Aarhus University, DK-8830, Tjele, Denmark.
Bernt GuldbrandtsenCenter for Quantitative Genetics and Genomics, Department of Molecular Biology and Genetics, Aarhus University, DK-8830, Tjele, Denmark.ORCID 0000-0003-1764-135X
Frank PanitzSection for Molecular Genetics and Systems Biology, Department of Molecular Biology and Genetics, Aarhus University, DK-8830, Tjele, Denmark.
Aarhus University · DKAIMST University · MY

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The American mink (Neovison vison) is a semiaquatic species of mustelid native to North America. It's an important animal for the fur industry. Many efforts have been made to locate genes influencing fur quality and color, but this search has been impeded by the lack of a reference genome. Here we present the first draft genome of mink. In our study, two mink individuals were sequenced by Illumina sequencing with 797 Gb sequence generated. Assembly yielded 7,175 scaffolds with an N50 of 6.3 Mb and length of 2.4 Gb including gaps. Repeat sequences constitute around 31% of the genome, which is lower than for dog and cat genomes. The alignments of mink, ferret and dog genomes help to illustrate the chromosomes rearrangement. Gene annotation identified 21,053 protein-coding sequences present in mink genome. The reference genome's structure is consistent with the microsatellite-based genetic map. Mapping of well-studied genes known to be involved in coat quality and coat color, and previously located fur quality QTL provide new knowledge about putative candidate genes for fur traits. The draft genome shows great potential to facilitate genomic research towards improved breeding for high fur quality animals and strengthen our understanding on evolution of Carnivora.

Indexed as

Animal FurAnimalsChromosome MappingColorDogsFemaleFerretsGenomeHigh-Throughput Nucleotide SequencingMaleMicrosatellite RepeatsMinkQuantitative Trait LociRepetitive Sequences, Nucleic AcidSequence Alignment

Identifiers

PMID29109430
PMCPMC5674041
OpenAlexW2766840161

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.