Evidence map›Paper›PMID 29109403›Full record

ArticleScientific reports2017

Identification of unusual peptides with new Cys frameworks in the venom of the cold-water sea anemone Cnidopus japonicus.

Vladislav V Babenko, Alexander N Mikov, Valentin A Manuvera, Nickolay A Anikanov, Sergey I Kovalchuk, Yaroslav A Andreev, Yulia A Logashina, Daniil A Kornilov, Alexander I Manolov, Nadya P Sanamyan and 6 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.1field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 16 citations in OpenAlex.

  1. Review
  2. Article
  3. Cnidarian toxins: omics approaches and recombinant proteins.The journal of venomous animals and toxins including tropical diseases · 2025
    Article
  4. Review
  5. Article
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 1 country.

Vladislav V BabenkoFederal Research and Clinical Centre of Physical-Chemical Medicine, Moscow, 119435, Russia. daniorerio34@gmail.com.
Alexander N MikovShemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow, 117997, Russia.
Valentin A ManuveraFederal Research and Clinical Centre of Physical-Chemical Medicine, Moscow, 119435, Russia.
Nickolay A AnikanovFederal Research and Clinical Centre of Physical-Chemical Medicine, Moscow, 119435, Russia.
Sergey I KovalchukFederal Research and Clinical Centre of Physical-Chemical Medicine, Moscow, 119435, Russia.
Yaroslav A AndreevShemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow, 117997, Russia.
Yulia A LogashinaShemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow, 117997, Russia.
Daniil A KornilovFederal Research and Clinical Centre of Physical-Chemical Medicine, Moscow, 119435, Russia.
Alexander I ManolovFederal Research and Clinical Centre of Physical-Chemical Medicine, Moscow, 119435, Russia.
Nadya P SanamyanKamchatka Branch of Pacific Geographical Institute, Far-Eastern Branch of the Russian Academy of Sciences, Petropavlovsk-Kamchatsky, 683000, Russia.
Karen E SanamyanKamchatka Branch of Pacific Geographical Institute, Far-Eastern Branch of the Russian Academy of Sciences, Petropavlovsk-Kamchatsky, 683000, Russia.
Elena S KostryukovaFederal Research and Clinical Centre of Physical-Chemical Medicine, Moscow, 119435, Russia.
Sergey A KozlovShemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow, 117997, Russia.
Eugene V GrishinShemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow, 117997, Russia.
Vadim M GovorunFederal Research and Clinical Centre of Physical-Chemical Medicine, Moscow, 119435, Russia.
Vassili N LazarevFederal Research and Clinical Centre of Physical-Chemical Medicine, Moscow, 119435, Russia.
Institute of Bioorganic Chemistry · RUMoscow Institute of Physics and Technology · RUResearch Institute of Physical Chemical Medicine · RUFar Eastern Branch of the Russian Academy of Sciences · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Sea anemones (Actiniaria) are intensely popular objects of study in venomics. Order Actiniaria includes more than 1,000 species, thus presenting almost unlimited opportunities for the discovery of novel biologically active molecules. The venoms of cold-water sea anemones are studied far less than the venoms of tropical sea anemones. In this work, we analysed the molecular venom composition of the cold-water sea anemone Cnidopus japonicus. Two sets of NGS data from two species revealed molecules belonging to a variety of structural classes, including neurotoxins, toxin-like molecules, linear polypeptides (Cys-free), enzymes, and cytolytics. High-throughput proteomic analyses identified 27 compounds that were present in the venoms. Some of the toxin-like polypeptides exhibited novel Cys frameworks. To characterise their function in the venom, we heterologously expressed 3 polypeptides with unusual Cys frameworks (designated CjTL7, CjTL8, and AnmTx Cj 1c-1) in E. coli. Toxicity tests revealed that the CjTL8 polypeptide displays strong crustacean-specific toxicity, while AnmTx Cj 1c-1 is toxic to both crustaceans and insects. Thus, an improved NGS data analysis algorithm assisted in the identification of toxins with unusual Cys frameworks showing no homology according to BLAST. Our study shows the advantage of combining omics analysis with functional tests for active polypeptide discovery.

Indexed as

Sea AnemonesAnimalsCnidarian VenomsPeptidesSequence AlignmentCnidarian VenomsPeptides

Identifiers

PMID29109403
PMCPMC5673964
OpenAlexW2765439842

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.