Evidence map›Paper›PMID 29107979›Full record

ArticlePloS one2017

Helicobacter pylori bab characterization in clinical isolates from Bhutan, Myanmar, Nepal and Bangladesh.

Shamshul Ansari, Evariste Tshibangu Kabamba, Pradeep Krishna Shrestha, Hafeza Aftab, Thein Myint, Lotay Tshering, Rabi Prakash Sharma, Nwe Ni, Than Than Aye, Phawinee Subsomwong and 7 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed, 2 pooled it
1.2field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 2 syntheses or guidelines pooled it, 16 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Article
  5. Identification ofComputational and mathematical methods in medicine · 2022
    Article
  6. Overview ofGut and liver · 2021
    Review
  7. Toxins · 2021
    Review
  8. Virulence of Helicobacter pylori outer membrane proteins: an updated review.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2020
    Review
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 10 institutions in 6 countries.

Shamshul AnsariDepartment of Environmental and Preventive Medicine, Oita University Faculty of Medicine, Yufu, Japan.
Evariste Tshibangu KabambaDepartment of Environmental and Preventive Medicine, Oita University Faculty of Medicine, Yufu, Japan.
Pradeep Krishna ShresthaGastroenterology Department, Maharajgunj Medical Campus, Tribhuvan University Teaching Hospital, Kathmandu, Nepal.
Hafeza AftabDepartment of Gastroenterology, Dhaka Medical College and Hospital, Dhaka, Bangladesh.
Thein MyintDepartment of Gastroenterology, Yangon General Hospital, Yangon, Myanmar.
Lotay TsheringDepartment of Surgery, Jigme Dorji Wangchuck National Referral Hospital, Thimphu, Bhutan.
Rabi Prakash SharmaGastroenterology Department, Maharajgunj Medical Campus, Tribhuvan University Teaching Hospital, Kathmandu, Nepal.
Nwe NiDepartment of Gastroenterology, Mandalay General Hospital and University of Medicine (Mandalay), Mandalay, Myanmar.
Than Than AyeDepartment of Gastroenterology, Thingangyun Sanpya General Hospital and University of Medicine (2), Thingangyun, Myanmar.
Phawinee SubsomwongDepartment of Environmental and Preventive Medicine, Oita University Faculty of Medicine, Yufu, Japan.
Tomohisa UchidaDepartment of Molecular Pathology, Faculty of Medicine, Oita University, Hasama-machi, Yufu-City, Oita, Japan.
Thawee Ratanachu-EkDepartment of Surgery, Rajavithi Hospital, Bangkok, Thailand.
Ratha-Korn VilaichoneGastroenterology Unit, Department of Medicine, Thammasat University Hospital, Pathum Thani, Thailand.
Varocha MahachaiGI and Liver Center, Bangkok Medical Center, Bangkok, Thailand.
Takashi MatsumotoDepartment of Environmental and Preventive Medicine, Oita University Faculty of Medicine, Yufu, Japan.
Junko AkadaDepartment of Environmental and Preventive Medicine, Oita University Faculty of Medicine, Yufu, Japan.
Yoshio YamaokaDepartment of Environmental and Preventive Medicine, Oita University Faculty of Medicine, Yufu, Japan.ORCID http://orcid.org/0000-0002-1222-5819
Oita University · JPTribhuvan University Teaching Hospital · NPBangkok Hospital · THBaylor College of Medicine · USDhaka Medical College and Hospital · BDEast Yangon General Hospital · MMRajavithi Hospital · THThammasat University Hospital · THUniversity of Medicine 2 Yangon · MMUniversity of Medicine Mandalay · MM

Funding

REGULATION OF CXC CHEMOKINE EXPRESSION BY H. PYLORIR01DK062813 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI YAMAOKA, YOSHIO · 2004 to 2013
$3.0M
NIDDK NIH HHS R01 DK062813
6 · The paper itself

Abstract

backgroundHelicobacter pylori BabA is an important outer membrane protein that involves in the attachment to the gastric mucosa and enhances the virulence property of the bacterium. This study was aimed to characterize the bab genotypes, to evaluate its association with cagA, vacA and clinical diseases as well as degree of gastric inflammation.

methodsH. pylori isolates from four countries were subjected for the characterization of bab. The locus specific forward and bab specific reverse primers were used to get the specific products by PCR, which could distinguish the three locus (A, B and C). The histological activities were evaluated according to the Updated Sydney system.

resultIn patients from high risk countries (Bhutan and Myanmar) relatively higher frequencies of strains with babA-positivity (91.8% and 90.7%, respectively), babA at locus A (98% and 91.2%, respectively) and with single babA (96.8% and 91.2%, respectively) were found. Strains with two loci occupied were the most prevalent in Bhutan (84.6%), Myanmar (74.7%), Nepal (58.3%) and Bangladesh (56.9%). The genotype babA at locus A/babB at locus B/bab-negative at locus C (babA/babB/-) was the most common genotype isolated from Bhutan (82.7%), Myanmar (58.7%), Nepal (32%) and Bangladesh (31.4%) among all genotypes assessed. This genotype was also associated with the peptic ulcer disease (P = 0.013) when compared to gastritis. babA-positive characteristics and the genotype babA/babB/- exhibited the enhanced histological activities.

conclusionsThe higher prevalence of virulence associated babA-positive characteristics and enhanced histological activities in Bhutan than in Myanmar, Nepal and Bangladesh might partly explain why the peoples in Bhutan are at higher risk for developing severe gastric complications.

Indexed as

BangladeshBhutanGastritisGenes, BacterialGenotypeHelicobacter InfectionsHelicobacter pyloriHumansMyanmarNepalVirulence

Identifiers

PMID29107979
PMCPMC5673166
OpenAlexW2767225572

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.