Evidence map›Paper›PMID 29107969›Full record

ArticlePloS one2017

Assessing single-stranded oligonucleotide drug-induced effects in vitro reveals key risk factors for thrombocytopenia.

Sabine Sewing, Adrian B Roth, Michael Winter, Andreas Dieckmann, Cristina Bertinetti-Lapatki, Yann Tessier, Claudia McGinnis, Sylwia Huber, Erich Koller, Corinne Ploix and 3 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
2.2field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 48 citations in OpenAlex.

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  20. Preclinical Safety Assessment of Therapeutic Oligonucleotides.Methods in molecular biology (Clifton, N.J.) · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 2 countries.

Sabine SewingRoche Pharma Research and Early Development, Roche Innovation Center Basel, Basel, Switzerland.ORCID http://orcid.org/0000-0003-0547-3977
Adrian B RothRoche Pharma Research and Early Development, Roche Innovation Center Basel, Basel, Switzerland.
Michael WinterRoche Pharma Research and Early Development, Roche Innovation Center Basel, Basel, Switzerland.
Andreas DieckmannRoche Pharma Research and Early Development, Roche Innovation Center Basel, Basel, Switzerland.
Cristina Bertinetti-LapatkiRoche Pharma Research and Early Development, Roche Innovation Center Basel, Basel, Switzerland.
Yann TessierRoche Pharma Research and Early Development, Roche Innovation Center Copenhagen A/S, Hørsholm, Denmark.
Claudia McGinnisRoche Pharma Research and Early Development, Roche Innovation Center Basel, Basel, Switzerland.
Sylwia HuberRoche Pharma Research and Early Development, Roche Innovation Center Basel, Basel, Switzerland.
Erich KollerRoche Pharma Research and Early Development, Roche Innovation Center Basel, Basel, Switzerland.
Corinne PloixRoche Pharma Research and Early Development, Roche Innovation Center Basel, Basel, Switzerland.
John C ReedRoche Pharma Research and Early Development, Roche Innovation Center Basel, Basel, Switzerland.
Thomas SingerRoche Pharma Research and Early Development, Roche Innovation Center Basel, Basel, Switzerland.
Andreas RothfussRoche Pharma Research and Early Development, Roche Innovation Center Basel, Basel, Switzerland.
Roche (Switzerland) · CHRoche (Denmark) · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Single-stranded oligonucleotides (ON) comprise a promising therapeutic platform that enables selective modulation of currently undruggable targets. The development of novel ON drug candidates has demonstrated excellent efficacy, but in certain cases also some safety liabilities were reported. Among them are events of thrombocytopenia, which have recently been evident in late stage trials with ON drugs. The underlying mechanisms are poorly understood and the risk for ON candidates causing such events cannot be sufficiently assessed pre-clinically. We investigated potential thrombocytopenia risk factors of ONs and implemented a set of in vitro assays to assess these risks. Our findings support previous observations that phosphorothioate (PS)-ONs can bind to platelet proteins such as platelet collagen receptor glycoprotein VI (GPVI) and activate human platelets in vitro to various extents. We also show that these PS-ONs can bind to platelet factor 4 (PF4). Binding to platelet proteins and subsequent activation correlates with ON length and connected to this, the number of PS in the backbone of the molecule. Moreover, we demonstrate that locked nucleic acid (LNA) ribosyl modifications in the wings of the PS-ONs strongly suppress binding to GPVI and PF4, paralleled by markedly reduced platelet activation. In addition, we provide evidence that PS-ONs do not directly affect hematopoietic cell differentiation in culture but at higher concentrations show a pro-inflammatory potential, which might contribute to platelet activation. Overall, our data confirm that certain molecular attributes of ONs are associated with a higher risk for thrombocytopenia. We propose that applying the in vitro assays discussed here during the lead optimization phase may aid in deprioritizing ONs with a potential to induce thrombocytopenia.

Indexed as

Bone MarrowEnzyme-Linked Immunosorbent AssayFlow CytometryHumansOligonucleotidesPlatelet ActivationPlatelet Membrane GlycoproteinsProtein BindingRisk FactorsSurface Plasmon ResonanceThrombocytopenialocked nucleic acidOligonucleotidesPlatelet Membrane Glycoproteinsplatelet membrane glycoprotein VI

Identifiers

PMID29107969
PMCPMC5673186
OpenAlexW2767260707

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.