Evidence map›Paper›PMID 29106414›Full record

ArticleNature structural & molecular biology2017

Cryo-EM structures of the human endolysosomal TRPML3 channel in three distinct states.

Xiaoyuan Zhou, Minghui Li, Deyuan Su, Qi Jia, Huan Li, Xueming Li, Jian Yang

Abstract read
In one paragraph

Article in Nature structural & molecular biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed, 1 pooled it
9.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 1 synthesis or guideline pooled it, 82 citations in OpenAlex.

  1. The protein interaction networks of mucolipins and two-pore channels.Biochimica et biophysica acta. Molecular cell research · 2019
    Pooled it
  2. Article
  3. Article
  4. Review
  5. Somatic Mutations inHypertension (Dallas, Tex. : 1979) · 2025
    Article
  6. Article
  7. Forty sites of TRP channel regulation.Current opinion in chemical biology · 2025
    Review
  8. Article
  9. The ion channels of endomembranes.Physiological reviews · 2024
    Review
  10. Molecular and structural basis of the dual regulation of the polycystin-2 ion channel by small-molecule ligands.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  11. Bidirectional Allosteric Coupling between PIPInternational journal of molecular sciences · 2024
    Article
  12. Review
  13. TRPML3/BK complex promotes autophagy and bacterial clearance by providing a positive feedback regulation of mTOR via PI3P.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  14. A Structural Overview of TRPML1 and the TRPML Family.Handbook of experimental pharmacology · 2023
    Article
  15. Review
  16. Structural mechanism of allosteric activation of TRPML1 by PI(3,5)PProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  17. Review
  18. Review
  19. Atomic insights into ML-SI3 mediated human TRPML1 inhibition.Structure (London, England : 1993) · 2021
    Article
  20. Structural Pharmacology of TRP Channels.Journal of molecular biology · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Xiaoyuan ZhouBeijing Advanced Innovation Center for Structural Biology, Tsinghua-Peking Joint Center for Life Sciences, School of Life Sciences, Tsinghua University, Beijing, China.
Minghui LiDepartment of Biological Sciences, Columbia University, New York, New York, USA.
Deyuan SuDepartment of Biological Sciences, Columbia University, New York, New York, USA.
Qi JiaDepartment of Orthopedic Oncology, Shanghai Changzheng Hospital, The Second Military Medical University, Shanghai, China.
Huan LiKey Laboratory of Animal Models and Human Disease Mechanisms of Chinese Academy of Sciences, Key Laboratory of Bioactive Peptides of Yunnan Province, and Ion Channel Research and Drug Development Center, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China.
Xueming LiBeijing Advanced Innovation Center for Structural Biology, Tsinghua-Peking Joint Center for Life Sciences, School of Life Sciences, Tsinghua University, Beijing, China.
Jian YangDepartment of Biological Sciences, Columbia University, New York, New York, USA.
Columbia University · USCenter for Life Sciences · CNSecond Military Medical University · CNUniversity of Chinese Academy of Sciences · CN

Funding

TRPML1 channel physiology and pathophysiologyR01GM085234 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI YANG, JIAN · 2009 to 2022
$4.2M
NIGMS NIH HHS R01 GM085234
6 · The paper itself

Abstract

TRPML3 channels are mainly localized to endolysosomes and play a critical role in the endocytic pathway. Their dysfunction causes deafness and pigmentation defects in mice. TRPML3 activity is inhibited by low endolysosomal pH. Here we present cryo-electron microscopy (cryo-EM) structures of human TRPML3 in the closed, agonist-activated, and low-pH-inhibited states, with resolutions of 4.06, 3.62, and 4.65 Å, respectively. The agonist ML-SA1 lodges between S5 and S6 and opens an S6 gate. A polycystin-mucolipin domain (PMD) forms a luminal cap. S1 extends into this cap, forming a 'gating rod' that connects directly to a luminal pore loop, which undergoes dramatic conformational changes in response to low pH. S2 extends intracellularly and interacts with several intracellular regions to form a 'gating knob'. These unique structural features, combined with the results of electrophysiological studies, indicate a new mechanism by which luminal pH and other physiological modulators such as PIP

Indexed as

AnimalsBinding SitesCell LineCryoelectron MicroscopyEndosomesHEK293 CellsHumansIon Channel GatingLysosomesModels, MolecularProtein DomainsProtein Structure, SecondarySf9 CellsSpodopteraTransient Receptor Potential ChannelsMCOLN3 protein, humanTransient Receptor Potential Channels

Identifiers

PMID29106414
PMCPMC5747366
OpenAlexW2768082424

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.