Evidence map›Paper›PMID 29106412›Full record

ArticleNature structural & molecular biology2017

Short poly(A) tails are a conserved feature of highly expressed genes.

Sarah Azoubel Lima, Laura B Chipman, Angela L Nicholson, Ying-Hsin Chen, Brian A Yee, Gene W Yeo, Jeff Coller, Amy E Pasquinelli

Abstract read
In one paragraph

Article in Nature structural & molecular biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 185 papers.

0numbers the graph read from it
0cells of the map it votes in
185citing papers in PubMed
7.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

185 citing papers in PubMed, 298 citations in OpenAlex.

  1. Article
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  9. Translational Fidelity Decline in the Aging Oocyte and Embryo Development.International journal of molecular sciences · 2026
    Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Review
  15. Poly(A) tail regulation in stem cells and early development.Cell regeneration (London, England) · 2025
    Review
  16. Review
  17. Article
  18. Review
  19. Review
  20. Article

125 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Sarah Azoubel LimaDivision of Biology, University of California, San Diego, La Jolla, California, USA.
Laura B ChipmanDivision of Biology, University of California, San Diego, La Jolla, California, USA.
Angela L NicholsonDivision of Biology, University of California, San Diego, La Jolla, California, USA.ORCID http://orcid.org/0000-0002-9402-5318
Ying-Hsin ChenCenter for RNA Science and Therapeutics, Case Western Reserve University, Cleveland, Ohio, USA.
Brian A YeeDepartment of Cellular and Molecular Medicine, University of California at San Diego, La Jolla, California, USA.
Gene W YeoDepartment of Cellular and Molecular Medicine, University of California at San Diego, La Jolla, California, USA.
Jeff CollerCenter for RNA Science and Therapeutics, Case Western Reserve University, Cleveland, Ohio, USA.ORCID http://orcid.org/0000-0001-5662-8110
Amy E PasquinelliDivision of Biology, University of California, San Diego, La Jolla, California, USA.ORCID http://orcid.org/0000-0002-9511-0039
University of California San Diego · USCase Western Reserve University · US

Funding

GENETIC MECHANISMS AND REGULATIONT32GM007240 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HAMPTON, RANDOLPH Y. · 1985 to 2019
$23.8M
Functional RNA elements in the human genomeR01HG004659 · NHGRI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Kevin Daniel Corbett, Eugene Wei-Ming Yeo · 2008 to 2026
$12.4M
Role of Argonaute in miRNA biogenesis and functionR01GM071654 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI PASQUINELLI, AMY E. · 2004 to 2017
$4.0M
Understanding the Interconnection Between mRNA turnover and mRNA TranslationR01GM125086 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI COLLER, JEFFERY · 2017 to 2020
$1.6M
Determining the influence of codon optimality on mRNA translation and decayR01GM118018 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI COLLER, JEFFERY · 2017 to 2020
$1.3M
NHGRI NIH HHS R01 HG004659NIGMS NIH HHS R01 GM071654NIGMS NIH HHS R01 GM118018NIGMS NIH HHS R01 GM125086NIGMS NIH HHS T32 GM007240
6 · The paper itself

Abstract

Poly(A) tails are important elements in mRNA translation and stability, although recent genome-wide studies have concluded that poly(A) tail length is generally not associated with translational efficiency in nonembryonic cells. To investigate whether poly(A) tail size might be coupled to gene expression in an intact organism, we used an adapted TAIL-seq protocol to measure poly(A) tails in Caenorhabditis elegans. Surprisingly, we found that well-expressed transcripts contain relatively short, well-defined tails. This attribute appears to be dependent on translational efficiency, as transcripts enriched for optimal codons and ribosome association had the shortest tail sizes, whereas noncoding RNAs retained long tails. Across eukaryotes, short tails were a feature of abundant and well-translated mRNAs. This seems to contradict the dogma that deadenylation induces translational inhibition and mRNA decay and suggests that well-expressed mRNAs accumulate with pruned tails that accommodate a minimal number of poly(A)-binding proteins, which may be ideal for protective and translational functions.

Indexed as

AnimalsCaenorhabditis elegansGene ExpressionGene Expression RegulationHigh-Throughput Nucleotide SequencingPeptide Chain Elongation, TranslationalPoly ARNA, MessengerRNA, UntranslatedPoly ARNA, MessengerRNA, Untranslated

Identifiers

PMID29106412
PMCPMC5877826
OpenAlexW2767360874

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.