Evidence map›Paper›PMID 29106381›Full record

Trial reportThe Journal of clinical investigation2017

A digenic human immunodeficiency characterized by IFNAR1 and IFNGR2 mutations.

Rodrigo Hoyos-Bachiloglu, Janet Chou, Catherine N Sodroski, Abdallah Beano, Wayne Bainter, Magdalena Angelova, Eman Al Idrissi, Murad K Habazi, Hamza Ali Alghamdi, Fahd Almanjomi and 6 more

Open access · bronzeAbstract readClinical Trial
In one paragraph

Trial report in The Journal of clinical investigation, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed, 1 pooled it
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 1 synthesis or guideline pooled it, 55 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Review
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  11. Article
  12. Article
  13. Review
  14. Article
  15. Review
  16. High Dose IFN-Frontiers in immunology · 2021
    Article
  17. Review
  18. Early type I IFN blockade improves the efficacy of viral vaccines.The Journal of experimental medicine · 2020
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 2 institutions in 2 countries.

Rodrigo Hoyos-BachilogluDivision of Immunology, Boston Children's Hospital and Department of Pediatrics, and.
Janet ChouDivision of Immunology, Boston Children's Hospital and Department of Pediatrics, and.
Catherine N SodroskiDepartment of Microbiology and Immunobiology and Harvard Program in Virology, Harvard Medical School, Boston, Massachusetts, USA.
Abdallah BeanoDivision of Immunology, Boston Children's Hospital and Department of Pediatrics, and.
Wayne BainterDivision of Immunology, Boston Children's Hospital and Department of Pediatrics, and.
Magdalena AngelovaDepartment of Microbiology and Immunobiology and Harvard Program in Virology, Harvard Medical School, Boston, Massachusetts, USA.
Eman Al IdrissiDepartment of Pediatrics, King Fahad Medical City, Riyadh, Saudi Arabia.
Murad K HabaziDepartment of Pediatrics, King Fahad Medical City, Riyadh, Saudi Arabia.
Hamza Ali AlghamdiDepartment of Pediatrics, King Fahad Medical City, Riyadh, Saudi Arabia.
Fahd AlmanjomiDepartment of Pediatrics, King Fahad Medical City, Riyadh, Saudi Arabia.
Mohamed Al ShehriDepartment of Pediatrics, King Fahad Medical City, Riyadh, Saudi Arabia.
Nagi ElsidigDepartment of Pediatrics, King Fahad Medical City, Riyadh, Saudi Arabia.
Morsi Alaa EldinDepartment of Pediatrics, King Fahad Medical City, Riyadh, Saudi Arabia.
David M KnipeDepartment of Microbiology and Immunobiology and Harvard Program in Virology, Harvard Medical School, Boston, Massachusetts, USA.
Mofareh AlZahraniDepartment of Pediatrics, King Fahad Medical City, Riyadh, Saudi Arabia.
Raif S GehaDivision of Immunology, Boston Children's Hospital and Department of Pediatrics, and.
King Fahd Medical City · SABoston Children's Hospital · US

Funding

Role of TACI mutations in CVIDP01AI076210 · NIAID · BETH ISRAEL DEACONESS MEDICAL CENTER · PI TERHORST, CORNELIS P · 2009 to 2013
$9.0M
Nuclear Sensing of Herpesviral DNAR01AI106934 · NIAID · HARVARD MEDICAL SCHOOL · PI KNIPE, DAVID M. · 2014 to 2021
$3.8M
Novel mechanisms of T cell costimulation: the role of LRRC8A in T cell activationK08AI116979 · NIAID · BOSTON CHILDREN'S HOSPITAL · PI CHOU, JANET · 2015 to 2019
$934k
Mechanisms of disease in patients with I?B? mutationsR21AI124101 · NIAID · BOSTON CHILDREN'S HOSPITAL · PI GEHA, RAIF SALIM · 2016 to 2017
$487k
NIAID NIH HHS K08 AI116979NIAID NIH HHS P01 AI076210NIAID NIH HHS R01 AI106934NIAID NIH HHS R21 AI124101
6 · The paper itself

Abstract

Primary immunodeficiencies are often monogenic disorders characterized by vulnerability to specific infectious pathogens. Here, we performed whole-exome sequencing of a patient with disseminated Mycobacterium abscessus, Streptococcus viridians bacteremia, and cytomegalovirus (CMV) viremia and identified mutations in 2 genes that regulate distinct IFN pathways. The patient had a homozygous frameshift deletion in IFNGR2, which encodes the signal transducing chain of the IFN-γ receptor, that resulted in minimal protein expression and abolished downstream signaling. The patient also harbored a homozygous deletion in IFNAR1 (IFNAR1*557Gluext*46), which encodes the IFN-α receptor signaling subunit. The IFNAR1*557Gluext*46 resulted in replacement of the stop codon with 46 additional codons at the C-terminus. The level of IFNAR1*557Gluext*46 mutant protein expressed in patient fibroblasts was comparable to levels of WT IFNAR1 in control fibroblasts. IFN-α-induced signaling was impaired in the patient fibroblasts, as evidenced by decreased STAT1/STAT2 phosphorylation, nuclear translocation of STAT1, and expression of IFN-α-stimulated genes critical for CMV immunity. Pretreatment with IFN-α failed to suppress CMV protein expression in patient fibroblasts, whereas expression of WT IFNAR1 restored IFN-α-mediated suppression of CMV. This study identifies a human IFNAR1 mutation and describes a digenic immunodeficiency specific to type I and type II IFNs.

Indexed as

MutationReceptor, Interferon alpha-betaReceptors, InterferonBacteremiaCytomegalovirusCytomegalovirus InfectionsFemaleFibroblastsGenetic Diseases, InbornHumansImmunologic Deficiency SyndromesMaleMycobacterium abscessusMycobacterium Infections, NontuberculousPhosphorylationSTAT1 Transcription FactorIFNAR1 protein, humanIFNGR2 protein, humanReceptor, Interferon alpha-betaReceptors, InterferonSTAT1 protein, humanSTAT1 Transcription FactorSTAT2 protein, humanSTAT2 Transcription FactorImmunologyInnate immunityVirology

Identifiers

PMID29106381
PMCPMC5707159
OpenAlexW2767034349

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.