Evidence map›Paper›PMID 29104227›Full record

ArticleInternational journal of molecular sciences2017

Inter-Species Host Gene Expression Differences in Response to Human and Avian Influenza A Virus Strains.

Biruhalem Taye, Dawn Yeo, Raphael Tze Chuen Lee, Boon Huan Tan, Richard J Sugrue, Sebastian Maurer-Stroh

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Biruhalem TayeSchool of Biological Sciences, Nanyang Technological University, 60 Nanyang Drive, Singapore 637551, Singapore. biruhalem@bii.a-star.edu.sg.ORCID 0000-0002-6866-022X
Dawn YeoSchool of Biological Sciences, Nanyang Technological University, 60 Nanyang Drive, Singapore 637551, Singapore. ysuyin@dso.org.sg.
Raphael Tze Chuen LeeBioinformatics Institute (BII), 30 Biopolis Street, #07-01 Matrix Building, Singapore 138671, Singapore. leetc@bii.a-star.edu.sg.ORCID 0000-0001-5634-9154
Boon Huan TanDetection and Diagnostics Laboratory, DSO National Laboratories, 27 Medical Drive, Singapore 117510, Singapore. tboonhua@dso.org.sg.
Richard J SugrueSchool of Biological Sciences, Nanyang Technological University, 60 Nanyang Drive, Singapore 637551, Singapore. rjsugrue@ntu.edu.sg.
Sebastian Maurer-StrohBioinformatics Institute (BII), 30 Biopolis Street, #07-01 Matrix Building, Singapore 138671, Singapore. sebastianms@bii.a-star.edu.sg.ORCID 0000-0003-0813-9640

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Low pathogenic avian influenza (LPAI) viruses are a source of sporadic human infections and could also contribute to future pandemic outbreaks but little is known about inter-species differences in the host responses to these viruses. Here, we studied host gene expression signatures of cell lines from three species (human, chicken, and canine) in response to six different viruses (H1N1/WSN, H5N2/F59, H5N2/F118, H5N2/F189, H5N3 and H9N2). Comprehensive microarray probe set re-annotation and ortholog mapping of the host genes was necessary to allow comparison over extended functionally annotated gene sets and orthologous pathways. The annotations are made available to the community for commonly used microarray chips. We observe a strong tendency of the response being cell type- rather than virus-specific. In chicken cells, we found up-regulation of host factors inducing virus infectivity (e.g., oxysterol binding protein like 1A (

Indexed as

TranscriptomeAnimalsApoptosisCell LineChickensDogsGene Expression RegulationHost-Pathogen InteractionsHumansInfluenza A virusInfluenza A Virus, H1N1 SubtypeInfluenza A Virus, H5N2 SubtypeInfluenza A Virus, H9N2 SubtypeInfluenza, HumanInfluenza in BirdsMetabolic Networks and Pathwaysapoptosisinfluenza A virusinter-species transcriptomemetabolic pathways

Identifiers

PMID29104227
PMCPMC5713265

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.