Evidence map›Paper›PMID 29101858›Full record

ArticleWater research2018

A human fecal contamination score for ranking recreational sites using the HF183/BacR287 quantitative real-time PCR method.

Yiping Cao, Mano Sivaganesan, Catherine A Kelty, Dan Wang, Alexandria B Boehm, John F Griffith, Stephen B Weisberg, Orin C Shanks

Abstract read
In one paragraph

Article in Water research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Yiping CaoSouthern California Coastal Water Research Project Authority, Costa Mesa, CA 92626, USA.
Mano SivaganesanU.S. Environmental Protection Agency, Office of Research and Development, Cincinnati, OH 45268, USA.
Catherine A KeltyU.S. Environmental Protection Agency, Office of Research and Development, Cincinnati, OH 45268, USA.
Dan WangDepartment of Civil and Environmental Engineering, Stanford University, Stanford CA 94305, USA.
Alexandria B BoehmDepartment of Civil and Environmental Engineering, Stanford University, Stanford CA 94305, USA.
John F GriffithSouthern California Coastal Water Research Project Authority, Costa Mesa, CA 92626, USA.
Stephen B WeisbergSouthern California Coastal Water Research Project Authority, Costa Mesa, CA 92626, USA.
Orin C ShanksU.S. Environmental Protection Agency, Office of Research and Development, Cincinnati, OH 45268, USA. Electronic address: shank.orin@epa.gov.

Funding

Intramural EPA EPA999999
6 · The paper itself

Abstract

Human fecal pollution of recreational waters remains a public health concern worldwide. As a result, there is a growing interest in the application of human-associated fecal source identification quantitative real-time PCR (qPCR) technologies for water quality research and management. However, there are currently no standardized approaches for field implementation and interpretation of qPCR data. In this study, a standardized HF183/BacR287 qPCR method was combined with a water sampling strategy and a novel Bayesian weighted average approach to establish a human fecal contamination score (HFS) that can be used to prioritize sampling sites for remediation based on measured human waste levels. The HFS was then used to investigate 975 study design scenarios utilizing different combinations of sites with varying sampling intensities (daily to once per week) and number of qPCR replicates per sample (2-14 replicates). Findings demonstrate that site prioritization with HFS is feasible and that both sampling intensity and number of qPCR replicates influence reliability of HFS estimates. The novel data analysis strategy presented here provides a prescribed approach for the implementation and interpretation of human-associated HF183/BacR287 qPCR data with the goal of site prioritization based on human fecal pollution levels. In addition, information is provided for future users to customize study designs for optimal HFS performance.

Indexed as

FecesBayes TheoremCaliforniaEnvironmental MonitoringHumansQuality ControlReal-Time Polymerase Chain ReactionRecreationReproducibility of ResultsWater MicrobiologyWater QualityHuman fecal pollutionMicrobial source trackingqPCRSite prioritization

Identifiers

PMID29101858
PMCPMC7228037

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.