Evidence map›Paper›PMID 29101021›Full record

ArticleNeuropharmacology2018

Microglial-specific transcriptome changes following chronic alcohol consumption.

Gizelle M McCarthy, Sean P Farris, Yuri A Blednov, R Adron Harris, R Dayne Mayfield

Abstract read
In one paragraph

Article in Neuropharmacology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
2.4field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 57 citations in OpenAlex.

  1. Article
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  9. Review
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  11. Review
  12. Article
  13. Identification of novel genetic loci and candidate genes for progressive ethanol consumption in diversity outbred mice.Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology · 2024
    Article
  14. Article
  15. Article
  16. Article
  17. Substance Use and Addiction.Advances in neurobiology · 2024
    Review
  18. Molecular mechanisms of alcohol's effects on the human body: A review and update.Journal of biochemical and molecular toxicology · 2023
    Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Gizelle M McCarthyWaggoner Center for Alcohol and Addiction Research, University of Texas at Austin, Austin, TX 78712, United States; Institute for Cellular and Molecular Biology, University of Texas at Austin, Austin, TX 78712, United States.
Sean P FarrisWaggoner Center for Alcohol and Addiction Research, University of Texas at Austin, Austin, TX 78712, United States.
Yuri A BlednovWaggoner Center for Alcohol and Addiction Research, University of Texas at Austin, Austin, TX 78712, United States.
R Adron HarrisWaggoner Center for Alcohol and Addiction Research, University of Texas at Austin, Austin, TX 78712, United States; Institute for Cellular and Molecular Biology, University of Texas at Austin, Austin, TX 78712, United States; Institute for Neuroscience, University of Texas at Austin, Austin, TX 78712, United States.
R Dayne MayfieldWaggoner Center for Alcohol and Addiction Research, University of Texas at Austin, Austin, TX 78712, United States. Electronic address: dayne.mayfield@austin.utexas.edu.
The University of Texas at Austin · US

Funding

GENE EXPRESSION IN THE HUMAN ALCOHOLIC BRAINR01AA012404 · NIAAA · UNIVERSITY OF TEXAS AUSTIN · PI MAYFIELD, ROY DAYNE · 2000 to 2025
$10.7M
INIA: ANIMAL COREU01AA013520 · NIAAA · UNIVERSITY OF TEXAS AUSTIN · PI YURI A BLEDNOV, ROBERT O. MESSING · 2001 to 2026
$9.5M
Next Generation Sequencing of Human Alcoholic BrainU01AA020926 · NIAAA · UNIVERSITY OF TEXAS AT AUSTIN · PI Roy DAYNE MAYFIELD · 2011 to 2026
$6.7M
Integrative Neuroscience Initiative on AlcoholismU24AA025479 · NIAAA · UNIVERSITY OF TEXAS AT AUSTIN · PI ROBERT O. MESSING · 2017 to 2026
$5.0M
Long Non-Coding RNA Regulation of Alcohol Drinking BehaviorR00AA024836 · NIAAA · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI FARRIS, SEAN P · 2020 to 2022
$667k
LONG NON-CODING RNA REGULATION OF ALCOHOL DRINKING BEHAVIORK99AA024836 · NIAAA · UNIVERSITY OF TEXAS AT AUSTIN · PI FARRIS, SEAN P · 2017 to 2018
$306k
The role of microglia and neuroimmune signaling in chronic ethanol consumptionF31AA024654 · NIAAA · UNIVERSITY OF TEXAS AT AUSTIN · PI ROBINSON, GIZELLE · 2016 to 2017
$44k
NIAAA NIH HHS F31 AA024654NIAAA NIH HHS K99 AA024836NIAAA NIH HHS R00 AA024836NIAAA NIH HHS R01 AA012404NIAAA NIH HHS U01 AA013520NIAAA NIH HHS U01 AA020926NIAAA NIH HHS U24 AA025479
6 · The paper itself

Abstract

Microglia are fundamentally important immune cells within the central nervous system (CNS) that respond to environmental challenges to maintain normal physiological processes. Alterations in steady-state cellular function and over-activation of microglia can facilitate the initiation and progression of neuropathological conditions such as Alzheimer's disease, Multiple Sclerosis, and Major Depressive Disorder. Alcohol consumption disrupts signaling pathways including both innate and adaptive immune responses that are necessary for CNS homeostasis. Coordinate expression of these genes is not ascertained from an admixture of CNS cell-types, underscoring the importance of examining isolated cellular populations to reveal systematic gene expression changes arising from mature microglia. Unbiased RNA-Seq profiling was used to identify gene expression changes in isolated prefrontal cortical microglia in response to recurring bouts of voluntary alcohol drinking behavior. The voluntary ethanol paradigm utilizes long-term consumption ethanol that results in escalated alcohol intake and altered cortical plasticity that is seen in humans. Gene coexpression analysis identified a coordinately regulated group of genes, unique to microglia, that collectively are associated with alcohol consumption. Genes within this group are involved in toll-like receptor signaling and transforming growth factor beta signaling. Network connectivity of this group identified Siglech as a putative hub gene and highlighted the potential importance of proteases in the microglial response to chronic ethanol. In conclusion, we identified a distinctive microglial gene expression signature for neuroimmune responses related to alcohol consumption that provides valuable insight into microglia-specific changes underlying the development of substance abuse, and possibly other CNS disorders.

Indexed as

AlcoholismAnalysis of VarianceAnimalsCD11b AntigenCentral Nervous System DepressantsChoice BehaviorComputational BiologyEthanolMaleMiceMice, Inbred C57BLMicrogliaNF-kappa BSignal TransductionToll-Like ReceptorsTranscriptomeCD11b AntigenCentral Nervous System DepressantsEthanolNF-kappa BToll-Like ReceptorsTransforming Growth Factor betaEthanolMicrogliaPrefrontal cortexToll-like receptorsTranscriptomeTransforming growth factor beta

Identifiers

PMID29101021
PMCPMC5990017
OpenAlexW2766563268

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.