Evidence map›Paper›PMID 29100762›Full record

ReviewCurrent opinion in microbiology2017

Staphylococcal pathogenicity islands-movers and shakers in the genomic firmament.

Richard P Novick, Geeta Ram

Open access · greenAbstract readReview
In one paragraph

Review in Current opinion in microbiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 72 citations in OpenAlex.

  1. Review
  2. Article
  3. Formation and role of the portal ofbioRxiv : the preprint server for biology · 2026
    Article
  4. Article
  5. Article
  6. Journal of bacteriology · 2025
    Review
  7. Characterization of a novelMicrobiology spectrum · 2025
    Article
  8. Article
  9. First whole genome sequencing ofOpen veterinary journal · 2024
    Article
  10. Genomic characterization of prophage elements inMicrobiology (Reading, England) · 2024
    Article
  11. Article
  12. The genesApplied and environmental microbiology · 2024
    Article
  13. Molecular characterization and antibiotic resistance ofFood science and biotechnology · 2024
    Article
  14. Article
  15. Microbiology spectrum · 2023
    Article
  16. Article
  17. Article
  18. The Epidemiology of Animal-Associated Methicillin-ResistantAntibiotics (Basel, Switzerland) · 2023
    Review
  19. Staphylococcal Enterotoxins Promote Virulence in Bacterial Keratitis.Investigative ophthalmology & visual science · 2023
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Richard P NovickSkirball Institute for Biomolecular Medicine, New York University School of Medicine, Departments of Medicine and Microbiology, 540 First Ave., New York, NY 10016, USA. Electronic address: richard.novick@med.nyu.edu.
Geeta RamSkirball Institute for Biomolecular Medicine, New York University School of Medicine, Departments of Medicine and Microbiology, 540 First Ave., New York, NY 10016, USA.
New York University · US

Funding

Molecular Biology of TSST-1 and other superantigen toxinsR01AI022159 · NIAID · PUBLIC HEALTH RESEARCH INSTITUTE · PI NOVICK, RICHARD P. · 1985 to 2014
$2.6M
NIAID NIH HHS R01 AI022159
6 · The paper itself

Abstract

The staphylococcal pathogenicity islands (SaPIs) are highly mobile 15kb genomic islands that carry superantigen genes and other virulence factors and are mobilized by helper phages. Helper phages counteract the SaPI repressor to induce the SaPI replication cycle, resulting in encapsidation in phage like particles, enabling high frequency transfer. The SaPIs split from a protophage lineage in the distant past, have evolved a variety of novel and salient features, and have become an invaluable component of the staphylococcal genome. This review focuses on recent studies describing three different mechanisms of SaPI interference with helper phage reproduction and other studies demonstrating that helper phage mutations to resistance against this interference impact phage evolution. Also described are recent results showing that SaPIs contribute in a major way to lateral transfer of host genes as well as enabling their own transfer. SaPI-like elements, readily identifiable in the bacterial genome, are widespread throughout the Gram-positive cocci, though functionality has thus far been demonstrated for only a single one of these.

Indexed as

Genome, BacterialGenomic IslandsInterspersed Repetitive SequencesBacteriophagesGene Transfer, HorizontalStaphylococcusTransduction, GeneticVirulence FactorsVirulence Factors

Identifiers

PMID29100762
PMCPMC5884141
OpenAlexW2765386872

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.